pycom15g03280

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029460
Physical Location & Seq
Forward (+)
2046827 .. 2047585
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03280.5

Sequence Viewer

Length: 597 bp
ATGCAAAATCAAATCAAATCTCTAATTAATTTCCTATATAAACCTAATAAATTCCAACAATATCCATATCCATATCCTTCGAGATGGTGGACGTGTTGGACGAAACGAGAAGGTGAAAATGCTCTTGTTCCTAAAACAAGAAGCTCTGTTTCCCCTAGCTGTTTTTGTTTTGACAAAGTCAGACGGGTAATTCTCCGTCGTGACATTGCGCTTAAGATAAAAGATCTGAATGGTAAGCTAAGTGCCATTGATGAGCAAAGAAAAATGTATGAGTTTCAAACGATATTTGCTTTTATTACCATTTCTAATCTGCTCAGGATCATTCTGTCACCGAAAAGTGTTCGCCTTTGTTTCCTCTTATCTGCAGCTGCTGTTGGGATCATATCCATTCAGTTTGCAAATAATAGTTCCTTGAGAAACATCCATGTTTTGGGTCTTTCGCGGTTTCTTGGGATTTCAATATCTCAATATTTTATTGAAGTAAGGAGGGAAGTGTCTATATCTGGTACTGGTAGGAAAAACCTACAGTTTGAAAACGGAAGTTTGAATTCCTTCACTCAACAATTTGATAATTCAGACTTTGAAAAGCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

9.98

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029460)

Species Orthologous Gene IDs
pyrus_communis pycom15g03260 pycom15g03280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 1 cut(s) 442
AciI CCGC 1 cut(s) 442
AclWI GGATC 2 cut(s) 326, 386
AcsI RAATTY 2 cut(s) 50, 547
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 1 cut(s) 430
AflII CTTAAG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 6 cut(s) 278, 459, 479, 533, 547, 584
AjiI CACGTC 1 cut(s) 93
AluBI AGCT 5 cut(s) 144, 159, 238, 368, 589
AluI AGCT 5 cut(s) 144, 159, 238, 368, 589
AlwI GGATC 2 cut(s) 326, 386
AlwNI CAGNNNCTG 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 365, 368
ApoI RAATTY 2 cut(s) 50, 547
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 125, 321
BbvI GCAGC 2 cut(s) 355, 377
BccI CCATC 1 cut(s) 78
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 363, 524
BfrI CTTAAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 366, 369
BlsI GCNGC 2 cut(s) 367, 370
BmgBI CACGTC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 2 cut(s) 355, 377
Bsh1236I CGCG 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 430
Bsp143I GATC 3 cut(s) 223, 318, 378
BspACI CCGC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 326, 386
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 514
BssMI GATC 3 cut(s) 223, 318, 378
Bst4CI ACNGT 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 239, 314
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 226, 321, 381
BstMBI GATC 3 cut(s) 223, 318, 378
BstSFI CTRYAG 2 cut(s) 363, 524
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 355, 377
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 507
CviAII CATG 1 cut(s) 425
CviJI RGCY 5 cut(s) 144, 159, 238, 368, 589
CviKI_1 RGCY 5 cut(s) 144, 159, 238, 368, 589
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 2 cut(s) 239, 314
DpnI GATC 3 cut(s) 225, 320, 380
DpnII GATC 3 cut(s) 223, 318, 378
EcoRI GAATTC 1 cut(s) 547
FaeI CATG 1 cut(s) 428
FaiI YATR 8 cut(s) 37, 39, 67, 73, 270, 383, 426, 500
FatI CATG 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 366, 369
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 366, 369
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 366, 369
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 428
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HphI GGTGA 2 cut(s) 125, 321
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 182, 228, 577
Hpy188III TCNNGA 3 cut(s) 81, 200, 316
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 87, 104, 562
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 3 cut(s) 4, 365, 398
HpyF3I CTNAG 2 cut(s) 239, 314
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 428
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 223, 318, 378
LpnPI CCDG 3 cut(s) 301, 489, 495
Lsp1109I GCAGC 2 cut(s) 355, 377
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 200, 327
MalI GATC 3 cut(s) 225, 320, 380
MboI GATC 3 cut(s) 223, 318, 378
MboII GAAGA 1 cut(s) 583
MflI RGATCY 1 cut(s) 223
MluCI AATT 7 cut(s) 24, 28, 50, 189, 547, 563, 571
MmeI TCCRAC 2 cut(s) 77, 79
MnlI CCTC 2 cut(s) 365, 480
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 2 cut(s) 27, 213
MspA1I CMGCKG 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 212
MvnI CGCG 1 cut(s) 442
NdeII GATC 3 cut(s) 223, 318, 378
NlaIII CATG 1 cut(s) 428
NmuCI GTSAC 2 cut(s) 200, 327
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 2 cut(s) 367, 370
PshBI ATTAAT 1 cut(s) 27
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
SaqAI TTAA 2 cut(s) 27, 213
SatI GCNGC 2 cut(s) 366, 369
Sau3AI GATC 3 cut(s) 223, 318, 378
SetI ASST 9 cut(s) 46, 95, 115, 146, 161, 240, 370, 525, 591
SfcI CTRYAG 2 cut(s) 363, 524
SmlI CTYRAG 2 cut(s) 212, 412
SmoI CTYRAG 2 cut(s) 212, 412
Sse9I AATT 7 cut(s) 24, 28, 50, 189, 547, 563, 571
SsiI CCGC 1 cut(s) 442
SspI AATATT 1 cut(s) 470
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 528
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 80
TasI AATT 7 cut(s) 24, 28, 50, 189, 547, 563, 571
Tru1I TTAA 2 cut(s) 27, 213
Tru9I TTAA 2 cut(s) 27, 213
TseFI GTSAC 2 cut(s) 200, 327
TseI GCWGC 2 cut(s) 365, 368
Tsp45I GTSAC 2 cut(s) 200, 327
TspGWI ACGGA 2 cut(s) 185, 552
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 2 cut(s) 50, 547
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.