pycom15g03650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0022505
Physical Location & Seq
Forward (+)
2221892 .. 2223385
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGATTGAAACTCCCCCTCCTCGAAATTATAGCAATATCAATTGGGTTTTCTTCTTTAAACTATTGAGTTTGAAGTATTTTACTTTACAGTTTAATATTATTAAGGACATACATGTGAAAAGTTCAACGAGTGTCAAAATAGCTACATGTGAAAAGTTCAACGAACGTCAAAAATTAGCTACATATAGTACAATTATCAGCACAACGGCTATAGTTTTAGGCCGTGTTTGGTGGTCTAATTCATTGTTTGTTATGTCAAAATTGAGTTATCCAACTTATCCTTATAAATGGGTTACAAGTTCCTGTCAATTCAATCATATCCATAATGGTGTAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCGTGGGTTCAAATCCCACTTCTGACATTTCTTTTCACATTTTTTTGCCCTTTTTCTCATATTTTCCTTTATTTTCACGATAACGAGTCTTCATGTTTAATTGTTCGGCAAAATGATGAATGGAAAATCATACCATATCGGACTCAATTTTTCGTTCCTTGTGTTTTACTTAACGCAAAAAATAAACGTATCCTTCTCTTATTCCCTCTCATGCAGAAAAAAGAATTTGATCGTAATCTCACAATCCCATTCAAATTTCAAAATATCTTTTTTACTGCTGGGTTAAAAACACAAATAGAAATCGTTTCTAAGTGCGACGTCAAGGGGTTTTCTGTCATCATTTACTCCAGAATTTCTCCCCTGAGCGTGGCGCGCTGCGCATGGGTTGCGCATGCGGGTTTAACGCTCATCACATCTGCTCATCTTAGGGCCTTCGAAGTGGAAGGCCAGGATTTGATTTCCAAGATACCATGCACACTTGAGCACGTGTGTTGTTCGCAGCAGAGAAAAGCTCCATATACTCGGAGCCATTTATCCAGGGACAATAAAGAAGTACACCATTTAACTGTTACAAAATCTGTCATCGAGCGTTGGACGGGCAGGTCACAAGACCGAAGAGGGAGGAGAAAGGCCGAGGTCTTGTACAGCAAGTTACAATACCTTTCCTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

41.16

Weight (kDa)

9.75

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022505)

Species Orthologous Gene IDs
prunus_persica Prupe.1G364100_v2.0.a1 Prupe.1G392700_v2.0.a1 Prupe.1G508300_v2.0.a1
pyrus_communis pycom15g03650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AasI GACNNNNNNGTC 1 cut(s) 991
AatII GACGTC 1 cut(s) 711
Acc16I TGCGCA 2 cut(s) 769, 780
Acc36I ACCTGC 1 cut(s) 981
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 1 cut(s) 763
AciI CCGC 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 3 cut(s) 614, 644, 741
AcvI CACGTG 1 cut(s) 877
AcyI GRCGYC 2 cut(s) 359, 708
AfaI GTAC 3 cut(s) 190, 945, 1034
AfiI CCNNNNNNNGG 1 cut(s) 757
AflIII ACRYGT 3 cut(s) 112, 146, 876
AgsI TTSAA 8 cut(s) 8, 73, 126, 160, 313, 401, 643, 650
AjnI CCWGG 2 cut(s) 837, 926
AluBI AGCT 3 cut(s) 143, 179, 902
AluI AGCT 3 cut(s) 143, 179, 902
Alw21I GWGCWC 1 cut(s) 876
Ama87I CYCGRG 1 cut(s) 1057
AoxI GGCC 5 cut(s) 220, 342, 819, 835, 1020
ApeKI GCWGC 2 cut(s) 765, 889
ApoI RAATTY 3 cut(s) 614, 644, 741
AspLEI GCGC 5 cut(s) 361, 763, 765, 770, 781
AspS9I GGNCC 2 cut(s) 377, 819
AsuII TTCGAA 1 cut(s) 825
AvaI CYCGRG 1 cut(s) 1057
AvaII GGWCC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 752, 901
BccI CCATC 1 cut(s) 334
BceAI ACGGC 2 cut(s) 207, 222
BciT130I CCWGG 2 cut(s) 839, 928
BciVI GTATCC 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 981
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 2 cut(s) 766, 890
BlsI GCNGC 2 cut(s) 767, 891
Bme1390I CCNGG 2 cut(s) 839, 928
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 1057
BmgT120I GGNCC 2 cut(s) 377, 819
BmiI GGNNCC 2 cut(s) 360, 917
BmrFI CCNGG 2 cut(s) 839, 928
BpiI GAAGAC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 886, 918
BpmI CTGGAG 1 cut(s) 721
Bpu10I CCTNAGC 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 352, 890
BsaAI YACGTR 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 2 cut(s) 359, 708
BsaJI CCNNGG 2 cut(s) 927, 1023
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 2 cut(s) 839, 928
BseDI CCNNGG 2 cut(s) 927, 1023
BseGI GGATG 1 cut(s) 345
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 1 cut(s) 757
BseMII CTCAG 1 cut(s) 743
BsePI GCGCGC 1 cut(s) 761
BseRI GAGGAG 2 cut(s) 9, 1027
BseXI GCAGC 2 cut(s) 752, 901
BseYI CCCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 5 cut(s) 222, 344, 821, 837, 1022
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 1057
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 1 cut(s) 757
BsmFI GGGAC 1 cut(s) 944
BsnI GGCC 5 cut(s) 222, 344, 821, 837, 1022
BsoBI CYCGRG 1 cut(s) 1057
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 876
Bsp1407I TGTACA 1 cut(s) 1032
Bsp143I GATC 1 cut(s) 619
BspACI CCGC 1 cut(s) 785
BspANI GGCC 5 cut(s) 222, 344, 821, 837, 1022
BspCNI CTCAG 1 cut(s) 744
BspFNI CGCG 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 360, 917
BspMI ACCTGC 1 cut(s) 981
BspT104I TTCGAA 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 1032
BssECI CCNNGG 2 cut(s) 927, 1023
BssHII GCGCGC 1 cut(s) 761
BssMI GATC 1 cut(s) 619
BssNI GRCGYC 2 cut(s) 359, 708
Bst2UI CCWGG 2 cut(s) 839, 928
Bst4CI ACNGT 2 cut(s) 90, 958
Bst6I CTCTTC 1 cut(s) 1000
BstACI GRCGYC 2 cut(s) 359, 708
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 1032
BstBAI YACGTR 1 cut(s) 877
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 2 cut(s) 763, 783
BstDEI CTNAG 4 cut(s) 354, 699, 752, 815
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 763
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 5 cut(s) 361, 763, 765, 770, 781
BstKTI GATC 1 cut(s) 622
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 3 cut(s) 762, 767, 776
BstNI CCWGG 2 cut(s) 839, 928
BstNSI RCATGY 3 cut(s) 116, 150, 785
BstSCI CCNGG 2 cut(s) 837, 926
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 752, 901
BstV2I GAAGAC 1 cut(s) 471
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 5 cut(s) 222, 344, 821, 837, 1022
BtsCI GGATG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 981
Cac8I GCNNGC 2 cut(s) 763, 783
CfoI GCGC 5 cut(s) 361, 763, 765, 770, 781
Cfr13I GGNCC 2 cut(s) 377, 819
Csp6I GTAC 3 cut(s) 189, 944, 1033
CviAII CATG 7 cut(s) 113, 147, 483, 601, 771, 782, 861
CviQI GTAC 3 cut(s) 189, 944, 1033
DdeI CTNAG 4 cut(s) 354, 699, 752, 815
DinI GGCGCC 1 cut(s) 360
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
DraI TTTAAA 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 991
DseDI GACNNNNNNGTC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 1000
EarI CTCTTC 1 cut(s) 1000
Eco47I GGWCC 1 cut(s) 377
Eco72I CACGTG 1 cut(s) 877
Eco88I CYCGRG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 819
EcoRII CCWGG 2 cut(s) 837, 926
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
FaeI CATG 7 cut(s) 116, 150, 486, 604, 774, 785, 864
FaqI GGGAC 1 cut(s) 944
FatI CATG 7 cut(s) 112, 146, 482, 600, 770, 781, 860
FauI CCCGC 1 cut(s) 778
Fnu4HI GCNGC 2 cut(s) 766, 890
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 766, 890
FspI TGCGCA 2 cut(s) 769, 780
GlaI GCGC 5 cut(s) 360, 762, 764, 769, 780
GluI GCNGC 2 cut(s) 766, 890
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 721
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 5 cut(s) 222, 344, 821, 837, 1022
HhaI GCGC 5 cut(s) 361, 763, 765, 770, 781
Hin1I GRCGYC 2 cut(s) 359, 708
Hin1II CATG 7 cut(s) 116, 150, 486, 604, 774, 785, 864
Hin6I GCGC 5 cut(s) 359, 761, 763, 768, 779
HinP1I GCGC 5 cut(s) 359, 761, 763, 768, 779
HinfI GANTC 3 cut(s) 365, 476, 532
Hpy166II GTNNAC 1 cut(s) 946
Hpy188I TCNGA 3 cut(s) 414, 531, 915
Hpy188III TCNNGA 3 cut(s) 337, 467, 738
Hpy8I GTNNAC 1 cut(s) 946
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 3 cut(s) 593, 827, 832
HpyCH4III ACNGT 2 cut(s) 90, 958
HpyCH4IV ACGT 4 cut(s) 166, 577, 708, 876
HpyCH4V TGCA 2 cut(s) 604, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 762, 767, 776
HpyF3I CTNAG 4 cut(s) 354, 699, 752, 815
HpySE526I ACGT 4 cut(s) 166, 577, 708, 876
Hsp92I GRCGYC 2 cut(s) 359, 708
Hsp92II CATG 7 cut(s) 116, 150, 486, 604, 774, 785, 864
HspAI GCGC 5 cut(s) 359, 761, 763, 768, 779
KasI GGCGCC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 2 cut(s) 907, 915
Lsp1109I GCAGC 2 cut(s) 752, 901
MaeII ACGT 4 cut(s) 166, 577, 708, 876
MaeIII GTNAC 4 cut(s) 292, 958, 993, 1041
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 3 cut(s) 43, 471, 1017
MfeI CAATTG 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 876
Mly113I GGCGCC 1 cut(s) 359
MlyI GAGTC 3 cut(s) 359, 485, 526
MmeI TCCRAC 2 cut(s) 296, 962
MnlI CCTC 8 cut(s) 27, 30, 381, 390, 606, 1001, 1005, 1018
MseI TTAA 8 cut(s) 57, 93, 102, 488, 561, 674, 791, 953
MslI CAYNNNNRTG 2 cut(s) 113, 327
MspR9I CCNGG 2 cut(s) 839, 928
MteI GCGCNGCGC 1 cut(s) 766
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 2 cut(s) 839, 928
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 3 cut(s) 762, 767, 776
NarI GGCGCC 1 cut(s) 359
NdeII GATC 1 cut(s) 619
NlaIII CATG 7 cut(s) 116, 150, 486, 604, 774, 785, 864
NlaIV GGNNCC 2 cut(s) 360, 917
NmeAIII GCCGAG 2 cut(s) 370, 1048
NmuCI GTSAC 1 cut(s) 993
NsbI TGCGCA 2 cut(s) 769, 780
NspI RCATGY 3 cut(s) 116, 150, 785
NspV TTCGAA 1 cut(s) 825
PaeI GCATGC 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 1057
PauI GCGCGC 1 cut(s) 761
PciI ACATGT 2 cut(s) 112, 146
PkrI GCNGC 2 cut(s) 767, 891
PleI GAGTC 3 cut(s) 359, 484, 526
PluTI GGCGCC 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 3 cut(s) 359, 484, 526
Ppu21I YACGTR 1 cut(s) 877
PscI ACATGT 2 cut(s) 112, 146
PsiI TTATAA 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 837, 926
PspCI CACGTG 1 cut(s) 877
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 2 cut(s) 837, 926
PspN4I GGNNCC 2 cut(s) 360, 917
PspPI GGNCC 2 cut(s) 377, 819
PspXI VCTCGAGB 1 cut(s) 1057
PteI GCGCGC 1 cut(s) 761
RsaI GTAC 3 cut(s) 190, 945, 1034
RsaNI GTAC 3 cut(s) 189, 944, 1033
RseI CAYNNNNRTG 2 cut(s) 113, 327
SaqAI TTAA 8 cut(s) 57, 93, 102, 488, 561, 674, 791, 953
SatI GCNGC 2 cut(s) 766, 890
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 2 cut(s) 377, 819
SchI GAGTC 3 cut(s) 359, 485, 526
ScrFI CCNGG 2 cut(s) 839, 928
SduI GDGCHC 1 cut(s) 876
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 1057
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 1057
SmiMI CAYNNNNRTG 2 cut(s) 113, 327
SmlI CTYRAG 3 cut(s) 367, 869, 1057
SmoI CTYRAG 3 cut(s) 367, 869, 1057
SphI GCATGC 1 cut(s) 785
SsiI CCGC 1 cut(s) 785
SspDI GGCGCC 1 cut(s) 358
SspI AATATT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 837, 926
TaaI ACNGT 2 cut(s) 90, 958
TaiI ACGT 4 cut(s) 169, 580, 711, 879
TaqI TCGA 4 cut(s) 22, 825, 975, 1058
TaqII GACCGA 1 cut(s) 1017
TatI WGTACW 3 cut(s) 188, 943, 1032
Tru1I TTAA 8 cut(s) 57, 93, 102, 488, 561, 674, 791, 953
Tru9I TTAA 8 cut(s) 57, 93, 102, 488, 561, 674, 791, 953
TseFI GTSAC 1 cut(s) 993
TseI GCWGC 2 cut(s) 765, 889
Tsp45I GTSAC 1 cut(s) 993
TspDTI ATGAA 3 cut(s) 231, 471, 522
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 3 cut(s) 614, 644, 741
XceI RCATGY 3 cut(s) 116, 150, 785
XhoI CTCGAG 1 cut(s) 1057
ZraI GACGTC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.