pycom15g10890

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028426
Physical Location & Seq
Forward (+)
7314362 .. 7316150
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10890.1

Sequence Viewer

Length: 1371 bp
ATGATCGACCCAGGGAAATCTAGGAGCCGAAGCTTCAGCCCTAAGAGGGCCATGAGTAAGAGTATGAGTATCAGTCCCAGGAGGAGTCCGACCAAGAGCCCAAGTTTAAGTGGCAAACGGAGTGAGAGCAGGAGTTCGAGTGTTAGTAGAAGCCCTCCTCCCCCTCAGAGGAGCAGGAGCATCAGCAGGAGTCCTGTTAGAAGCGATAGCAGTAGAAGCCCAGTCAGAGGTTTCAACAGAAGTCCAATGAGGGGCTGGAAGGGTAGGAGTCCAGTGAAAGGCCGGTCTCAAAGAAGCATAAGCAGGAGTCCTGTAAGCAGGAGCCCACCATATAGCAGAAGCCCAGTAAAAGTTCCAAGAAGCATAAGCAGAAGTCCACCAAGAAAATCATTGCGCAAGTCAATTAGTAGAAGCCCTGTTAGAGCTTCAAGAAGCAGAAGCCCAGTCATAGTTTCTCGAAGGAGAGCAAGCAGAAGCCCTGTAAGGGTCTCCAGAAGCAGAAGCCCAGTTAGATCTTATCGAAGGAGTGCAAGCAGAAGCCCTGTAAGAGTTTCAAGAAGCAGAAGCCCAGTTAGATCTTCTCGAAGGAGTGCAAGCAGAAGCCCTGTAAGAGTTTCAAGAAGCAGAAGCCCAGTTCGATCTTCTCGAAGGAGTGCAAGTAGAAGTTCAGGTAGGGTTCCTTCTAGGAAAACTGCTAGCCGCAGTCCGTTGAGGGCCCCTAGCAGGAATAACCGTCGCAGCTATTCAAGGAGTCCTAGCCCAGTAGCGCGTAGGGTAAGGTCGCCTATGTCACCAGATCGGGGGAGGAGCTTGTCAAGAAGTGCTTCACCTGATGGGTCACCAAAGCGCATTAGAAGAGGGCGGGGTTTCAGTCAGCGGTACTCTTATGCACGGAGGTACAGAACCCCTTCTTTGTCTCCTGTGAGATCTTATCGTTATGGTGGCGGTCGAAGTGATCGTGACAGATATTCAAGTTATAGAAGGTCCAGGTACTCTCCGAGGCGCTATAGAAGCCCACCAAGAAGAACACCTCCTAGATACAGAAGCAGAAGAAGCAGAAGTCCTGTATCACGTAGCCCCCGTTATCGCAGCCGAAACTATAGTCGGAGCCGTAGCCCTGTCCGAAGTCGTAGCCCCATCCAAAGCCGCAGTCGTTCTCCAGAGGAGGTGTCTAGATCACGTGTCTCTCCTCGGGTTGAGAGGGCAAGATCTCCATCCAGAAGCAGGAGCCCATCAAGATCAAGATCAAGATCAAGGTCCTCTCTGGATTCCAAATCTCCAATTCGGACCGGAAAAAGCAGGTCTAGATCATCATCAGGAAGCCCAATAGGGAAGAAGGGGTTGGTTTCGTACGATGATGTTTCCCCTTAG

Protein Analysis

457

Amino Acids

51.74

Weight (kDa)

12.0

Isoelectric Point (pI)

179.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028426)

Species Orthologous Gene IDs
malus_domestica MD15G1120700.v1.1
pyrus_communis pycom15g10890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 1290
AccII CGCG 1 cut(s) 769
AciI CCGC 5 cut(s) 700, 862, 877, 945, 1147
AcuI CTGAAG 1 cut(s) 19
AcvI CACGTG 1 cut(s) 1181
AfaI GTAC 4 cut(s) 881, 899, 992, 1352
AfiI CCNNNNNNNGG 9 cut(s) 46, 168, 227, 251, 278, 484, 723, 800, 1224
AflIII ACRYGT 1 cut(s) 1180
AgsI TTSAA 6 cut(s) 235, 429, 555, 618, 747, 972
AjnI CCWGG 3 cut(s) 10, 77, 986
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
AluBI AGCT 4 cut(s) 33, 425, 741, 810
AluI AGCT 4 cut(s) 33, 425, 741, 810
Alw26I GTCTC 4 cut(s) 291, 493, 921, 1189
Ama87I CYCGRG 1 cut(s) 1191
AoxI GGCC 3 cut(s) 48, 280, 714
ApaI GGGCCC 1 cut(s) 718
ApeKI GCWGC 2 cut(s) 738, 1089
ArsI GACNNNNNNTTYG 4 cut(s) 1087, 1119, 1135, 1167
Asp700I GAANNNNTTC 2 cut(s) 823, 907
AspLEI GCGC 4 cut(s) 396, 769, 849, 1005
AspS9I GGNCC 6 cut(s) 48, 714, 715, 984, 1257, 1287
AsuHPI GGTGA 3 cut(s) 783, 819, 831
AsuNHI GCTAGC 1 cut(s) 695
AvaI CYCGRG 1 cut(s) 1191
AvaII GGWCC 3 cut(s) 984, 1257, 1287
BaeGI GKGCMC 1 cut(s) 718
BanII GRGCYC 4 cut(s) 101, 326, 718, 1232
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BbrPI CACGTG 1 cut(s) 1181
BbvI GCAGC 2 cut(s) 750, 1101
BccI CCATC 4 cut(s) 827, 1145, 1222, 1240
BceAI ACGGC 1 cut(s) 1095
BciT130I CCWGG 3 cut(s) 12, 79, 988
BcoDI GTCTC 4 cut(s) 291, 493, 921, 1189
BfaI CTAG 8 cut(s) 21, 684, 696, 720, 756, 1035, 1173, 1305
BfmI CTRYAG 2 cut(s) 1006, 1099
BfoI RGCGCY 1 cut(s) 1006
BfuAI ACCTGC 1 cut(s) 1290
BglII AGATCT 4 cut(s) 512, 575, 926, 1208
BisI GCNGC 4 cut(s) 700, 739, 1090, 1147
BlsI GCNGC 4 cut(s) 701, 740, 1091, 1148
Bme1390I CCNGG 3 cut(s) 12, 79, 988
Bme18I GGWCC 3 cut(s) 984, 1257, 1287
BmeT110I CYCGRG 1 cut(s) 1191
BmgT120I GGNCC 6 cut(s) 48, 714, 715, 984, 1257, 1287
BmiI GGNNCC 7 cut(s) 26, 323, 678, 716, 717, 1109, 1229
BmrFI CCNGG 3 cut(s) 12, 79, 988
BmrI ACTGGG 7 cut(s) 215, 338, 437, 500, 563, 626, 755
BmsI GCATC 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 699
BmuI ACTGGG 7 cut(s) 215, 338, 437, 500, 563, 626, 755
BpmI CTGGAG 2 cut(s) 475, 1143
BsaAI YACGTR 2 cut(s) 1073, 1181
BsaBI GATNNNNATC 4 cut(s) 1213, 1243, 1249, 1312
BsaI GGTCTC 2 cut(s) 291, 493
BsaJI CCNNGG 5 cut(s) 10, 11, 77, 998, 1190
BsaWI WCCGGW 1 cut(s) 1289
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 643, 673
Bsc4I CCNNNNNNNGG 9 cut(s) 46, 168, 227, 251, 278, 484, 723, 800, 1224
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 8 cut(s) 221, 272, 344, 443, 506, 569, 632, 761
Bse3DI GCAATG 1 cut(s) 389
Bse8I GATNNNNATC 4 cut(s) 1213, 1243, 1249, 1312
BseBI CCWGG 3 cut(s) 12, 79, 988
BseDI CCNNGG 5 cut(s) 10, 11, 77, 998, 1190
BseGI GGATG 2 cut(s) 1137, 1214
BseJI GATNNNNATC 4 cut(s) 1213, 1243, 1249, 1312
BseLI CCNNNNNNNGG 9 cut(s) 46, 168, 227, 251, 278, 484, 723, 800, 1224
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 8 cut(s) 221, 272, 344, 443, 506, 569, 632, 761
BseRI GAGGAG 6 cut(s) 97, 147, 184, 820, 1178, 1179
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 2 cut(s) 750, 1101
Bsh1236I CGCG 1 cut(s) 769
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 3 cut(s) 50, 282, 716
BsiEI CGRYCG 1 cut(s) 949
BsiHKCI CYCGRG 1 cut(s) 1191
BsiSI CCGG 2 cut(s) 283, 1290
BsiWI CGTACG 1 cut(s) 1350
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 9 cut(s) 46, 168, 227, 251, 278, 484, 723, 800, 1224
BsmAI GTCTC 4 cut(s) 291, 493, 921, 1189
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 50, 282, 716
Bso31I GGTCTC 2 cut(s) 291, 493
BsoBI CYCGRG 1 cut(s) 1191
Bsp120I GGGCCC 1 cut(s) 714
Bsp1286I GDGCHC 4 cut(s) 101, 326, 718, 1232
BspACI CCGC 5 cut(s) 700, 862, 877, 945, 1147
BspANI GGCC 3 cut(s) 50, 282, 716
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 769
BspLI GGNNCC 7 cut(s) 26, 323, 678, 716, 717, 1109, 1229
BspMI ACCTGC 1 cut(s) 1290
BspOI GCTAGC 1 cut(s) 699
BspTNI GGTCTC 2 cut(s) 291, 493
BsrDI GCAATG 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 8 cut(s) 221, 272, 344, 443, 506, 569, 632, 761
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 5 cut(s) 10, 11, 77, 998, 1190
Bst2UI CCWGG 3 cut(s) 12, 79, 988
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 1 cut(s) 850
BstBAI YACGTR 2 cut(s) 1073, 1181
BstC8I GCNNGC 4 cut(s) 469, 532, 595, 697
BstDEI CTNAG 3 cut(s) 42, 165, 1368
BstEII GGTNACC 1 cut(s) 837
BstF5I GGATG 2 cut(s) 1137, 1214
BstFNI CGCG 1 cut(s) 769
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 4 cut(s) 396, 769, 849, 1005
BstMAI GTCTC 4 cut(s) 291, 493, 921, 1189
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 3 cut(s) 216, 1011, 1053
BstNI CCWGG 3 cut(s) 12, 79, 988
BstPI GGTNACC 1 cut(s) 837
BstSCI CCNGG 3 cut(s) 10, 77, 986
BstSFI CTRYAG 2 cut(s) 1006, 1099
BstSLI GKGCMC 1 cut(s) 718
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 2 cut(s) 750, 1101
BstX2I RGATCY 4 cut(s) 512, 575, 926, 1208
BstYI RGATCY 4 cut(s) 512, 575, 926, 1208
BsuRI GGCC 3 cut(s) 50, 282, 716
BtsCI GGATG 2 cut(s) 1137, 1214
BtsIMutI CAGTG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 1290
Cac8I GCNNGC 4 cut(s) 469, 532, 595, 697
CfoI GCGC 4 cut(s) 396, 769, 849, 1005
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 6 cut(s) 48, 714, 715, 984, 1257, 1287
CpoI CGGWCCG 1 cut(s) 1287
Csp6I GTAC 4 cut(s) 880, 898, 991, 1351
CspI CGGWCCG 1 cut(s) 1287
CviAII CATG 1 cut(s) 52
CviQI GTAC 4 cut(s) 880, 898, 991, 1351
DdeI CTNAG 3 cut(s) 42, 165, 1368
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Eco24I GRGCYC 4 cut(s) 101, 326, 718, 1232
Eco31I GGTCTC 2 cut(s) 291, 493
Eco47I GGWCC 3 cut(s) 984, 1257, 1287
Eco57I CTGAAG 1 cut(s) 19
Eco72I CACGTG 1 cut(s) 1181
Eco88I CYCGRG 1 cut(s) 1191
Eco91I GGTNACC 1 cut(s) 837
EcoO109I RGGNCCY 3 cut(s) 714, 715, 1257
EcoO65I GGTNACC 1 cut(s) 837
EcoRII CCWGG 3 cut(s) 10, 77, 986
EcoT38I GRGCYC 4 cut(s) 101, 326, 718, 1232
FaeI CATG 1 cut(s) 55
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 855
Fnu4HI GCNGC 4 cut(s) 700, 739, 1090, 1147
FokI GGATG 2 cut(s) 1124, 1201
FriOI GRGCYC 4 cut(s) 101, 326, 718, 1232
Fsp4HI GCNGC 4 cut(s) 700, 739, 1090, 1147
FspBI CTAG 8 cut(s) 21, 684, 696, 720, 756, 1035, 1173, 1305
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 4 cut(s) 395, 768, 848, 1004
GluI GCNGC 4 cut(s) 700, 739, 1090, 1147
GsuI CTGGAG 2 cut(s) 475, 1143
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 3 cut(s) 50, 282, 716
HapII CCGG 2 cut(s) 283, 1290
HhaI GCGC 4 cut(s) 396, 769, 849, 1005
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 4 cut(s) 394, 767, 847, 1003
HinP1I GCGC 4 cut(s) 394, 767, 847, 1003
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 6 cut(s) 85, 190, 268, 307, 751, 1268
HpaII CCGG 2 cut(s) 283, 1290
HphI GGTGA 3 cut(s) 783, 819, 831
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 7 cut(s) 90, 168, 227, 999, 1107, 1124, 1287
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 9 cut(s) 253, 453, 516, 579, 642, 690, 918, 975, 1330
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 2 cut(s) 1072, 1180
HpyCH4V TGCA 4 cut(s) 530, 593, 656, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 1011, 1053
HpyF3I CTNAG 3 cut(s) 42, 165, 1368
HpySE526I ACGT 2 cut(s) 1072, 1180
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 4 cut(s) 394, 767, 847, 1003
LmnI GCTCC 7 cut(s) 24, 171, 177, 321, 807, 1107, 1227
Lsp1109I GCAGC 2 cut(s) 750, 1101
LweI GCATC 1 cut(s) 189
MaeI CTAG 8 cut(s) 21, 684, 696, 720, 756, 1035, 1173, 1305
MaeII ACGT 2 cut(s) 1072, 1180
MaeIII GTNAC 3 cut(s) 789, 837, 959
MboII GAAGA 6 cut(s) 570, 633, 867, 1035, 1062, 1345
MflI RGATCY 4 cut(s) 512, 575, 926, 1208
MhlI GDGCHC 4 cut(s) 101, 326, 718, 1232
MluCI AATT 2 cut(s) 402, 1281
MlyI GAGTC 5 cut(s) 94, 199, 277, 316, 760
MmeI TCCRAC 2 cut(s) 113, 1085
MroXI GAANNNNTTC 2 cut(s) 823, 907
MseI TTAA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 877
MspI CCGG 2 cut(s) 283, 1290
MspR9I CCNGG 3 cut(s) 12, 79, 988
MvaI CCWGG 3 cut(s) 12, 79, 988
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 3 cut(s) 216, 1011, 1053
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 7 cut(s) 26, 323, 678, 716, 717, 1109, 1229
NmuCI GTSAC 3 cut(s) 789, 837, 959
NsbI TGCGCA 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 11
PcsI WCGNNNNNNNCGW 3 cut(s) 643, 955, 1078
PdmI GAANNNNTTC 2 cut(s) 823, 907
PfeI GAWTC 1 cut(s) 1268
Pfl23II CGTACG 1 cut(s) 1350
PkrI GCNGC 4 cut(s) 701, 740, 1091, 1148
PleI GAGTC 5 cut(s) 93, 198, 276, 315, 759
PmaCI CACGTG 1 cut(s) 1181
PmlI CACGTG 1 cut(s) 1181
PpsI GAGTC 5 cut(s) 93, 198, 276, 315, 759
Ppu21I YACGTR 2 cut(s) 1073, 1181
PpuMI RGGWCCY 1 cut(s) 1257
Psp5II RGGWCCY 1 cut(s) 1257
Psp6I CCWGG 3 cut(s) 10, 77, 986
PspCI CACGTG 1 cut(s) 1181
PspEI GGTNACC 1 cut(s) 837
PspGI CCWGG 3 cut(s) 10, 77, 986
PspLI CGTACG 1 cut(s) 1350
PspN4I GGNNCC 7 cut(s) 26, 323, 678, 716, 717, 1109, 1229
PspOMI GGGCCC 1 cut(s) 714
PspPI GGNCC 6 cut(s) 48, 714, 715, 984, 1257, 1287
PspPPI RGGWCCY 1 cut(s) 1257
PsuI RGATCY 4 cut(s) 512, 575, 926, 1208
RsaI GTAC 4 cut(s) 881, 899, 992, 1352
RsaNI GTAC 4 cut(s) 880, 898, 991, 1351
Rsr2I CGGWCCG 1 cut(s) 1287
RsrII CGGWCCG 1 cut(s) 1287
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 4 cut(s) 700, 739, 1090, 1147
Sau96I GGNCC 6 cut(s) 48, 714, 715, 984, 1257, 1287
SchI GAGTC 5 cut(s) 94, 199, 277, 316, 760
ScrFI CCNGG 3 cut(s) 12, 79, 988
SduI GDGCHC 4 cut(s) 101, 326, 718, 1232
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 2 cut(s) 1006, 1099
SinI GGWCC 3 cut(s) 984, 1257, 1287
Sse9I AATT 2 cut(s) 402, 1281
SsiI CCGC 5 cut(s) 700, 862, 877, 945, 1147
SspMI CTAG 8 cut(s) 21, 684, 696, 720, 756, 1035, 1173, 1305
StyD4I CCNGG 3 cut(s) 10, 77, 986
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 2 cut(s) 1075, 1183
TaqI TCGA 8 cut(s) 6, 137, 457, 520, 583, 637, 646, 949
TasI AATT 2 cut(s) 402, 1281
TauI GCSGC 2 cut(s) 702, 1149
TfiI GAWTC 1 cut(s) 1268
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 3 cut(s) 789, 837, 959
TseI GCWGC 2 cut(s) 738, 1089
Tsp45I GTSAC 3 cut(s) 789, 837, 959
TspGWI ACGGA 3 cut(s) 133, 696, 907
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 984, 1257, 1287
XbaI TCTAGA 2 cut(s) 1172, 1304
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 823, 907
XspI CTAG 8 cut(s) 21, 684, 696, 720, 756, 1035, 1173, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.