pycom15g13380

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028408
Physical Location & Seq
Forward (+)
9132537 .. 9132887
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13380.1

Sequence Viewer

Length: 351 bp
ATGGCTACCCCCTCCGGGCATCTCCTCCTTAAGCTGCTTGTTTGCACGGTGGCGGTGGTTATGGTGGCAGCTCTTGCGCCCAAGGCTGAAGAGGGAACCTTCGTTTGTGACATTATTCAGGTGCAGGAAACCATGTGGGCATGCAGACCATACATCTTTAAACGTGGGGAGTTGACTAAAGCTTGCTGCAATGGGGTCAAGACCGTCTACAGAGATGTTAAGACCGCCGTTGACCGCCAGGCAGCCTGCAAGTGCATCATAGATTTAGTCCCGTTTGATCGTACAAGTGAAACCCGGATTGCTGGCCTGCCTACCAAGTGTGGGATTCCCAACAATAACTGCACAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

12.63

Weight (kDa)

8.62

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 42 - 114 1.3e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028408)

Species Orthologous Gene IDs
malus_domestica MD15G1149700.v1.1
pyrus_communis pycom15g13380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AciI CCGC 3 cut(s) 53, 225, 235
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 15, 321
AflII CTTAAG 1 cut(s) 29
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 34, 71, 182
AluI AGCT 3 cut(s) 34, 71, 182
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 4 cut(s) 34, 68, 186, 242
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 16, 295
BbvI GCAGC 4 cut(s) 21, 80, 173, 254
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 2 cut(s) 16, 295
BfmI CTRYAG 1 cut(s) 208
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 4 cut(s) 35, 69, 187, 243
BlsI GCNGC 4 cut(s) 36, 70, 188, 244
Bme1390I CCNGG 3 cut(s) 16, 239, 295
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 16, 239, 295
BmsI GCATC 2 cut(s) 28, 264
BpuMI CCSGG 2 cut(s) 16, 295
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 321
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 15, 321
BseMI GCAATG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 4 cut(s) 21, 80, 173, 254
BsgI GTGCAG 2 cut(s) 143, 325
BshFI GGCC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 15, 295
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 15, 321
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 3 cut(s) 53, 225, 235
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 49, 205
Bst6I CTCTTC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 5 cut(s) 142, 184, 247, 304, 308
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 74, 83
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 14, 237, 293
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 4 cut(s) 21, 80, 173, 254
BsuRI GGCC 1 cut(s) 306
Cac8I GCNNGC 5 cut(s) 142, 184, 247, 304, 308
CfoI GCGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 282
CviAII CATG 2 cut(s) 133, 141
CviJI RGCY 7 cut(s) 5, 34, 71, 86, 182, 245, 306
CviKI_1 RGCY 7 cut(s) 5, 34, 71, 86, 182, 245, 306
CviQI GTAC 1 cut(s) 282
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 136, 144
FaiI YATR 6 cut(s) 62, 134, 142, 151, 260, 349
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 132, 140
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 35, 69, 187, 243
Fsp4HI GCNGC 4 cut(s) 35, 69, 187, 243
GlaI GCGC 1 cut(s) 78
GluI GCNGC 4 cut(s) 35, 69, 187, 243
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 15, 295
HhaI GCGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 136, 144
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 2 cut(s) 174, 232
HindII GTYRAC 2 cut(s) 174, 232
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 325
HpaII CCGG 2 cut(s) 15, 295
Hpy166II GTNNAC 3 cut(s) 174, 208, 232
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 174, 208, 232
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 49, 205
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 7 cut(s) 45, 124, 144, 189, 249, 255, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 83
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 136, 144
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 9 cut(s) 28, 104, 110, 224, 251, 259, 288, 308, 320
Lsp1109I GCAGC 4 cut(s) 21, 80, 173, 254
LweI GCATC 2 cut(s) 28, 264
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 101
MnlI CCTC 3 cut(s) 22, 35, 85
MseI TTAA 3 cut(s) 30, 159, 219
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 2 cut(s) 15, 295
MspR9I CCNGG 3 cut(s) 16, 239, 295
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 74, 83
NciI CCSGG 2 cut(s) 16, 295
NdeII GATC 1 cut(s) 277
NlaIII CATG 2 cut(s) 136, 144
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 4 cut(s) 36, 70, 188, 244
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 30, 159, 219
SatI GCNGC 4 cut(s) 35, 69, 187, 243
Sau3AI GATC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 16, 239, 295
SetI ASST 6 cut(s) 36, 73, 101, 123, 166, 184
SfaNI GCATC 2 cut(s) 28, 264
SfcI CTRYAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SphI GCATGC 1 cut(s) 144
SsiI CCGC 3 cut(s) 53, 225, 235
StyD4I CCNGG 3 cut(s) 14, 237, 293
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 49, 205
TaiI ACGT 1 cut(s) 166
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 3 cut(s) 30, 159, 219
Tru9I TTAA 3 cut(s) 30, 159, 219
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 4 cut(s) 34, 68, 186, 242
Tsp45I GTSAC 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 29
XceI RCATGY 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.