pycom15g16100

histone h2a

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
11231067 .. 11231267
201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16100.1

Sequence Viewer

Length: 201 bp
ATGTTCTTCACCTTCACGCGGCATTACAAGACGGGCTTCGATGCCTTTATTGATGAGGACAATCTGAAAAGAGGGGAAGAAATAAAACTCGAACTGTTGCGGGCAATCGAAGAGTCCAGTATCTCGGTCATTGTCTTCTTAAAGTGTTACGCGGAATCAAGATGGTGTCTTGACGAGCTGGTGAAGATCGATGGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.81

Weight (kDa)

4.84

Isoelectric Point (pI)

68.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 9 - 63 3.2e-16 TIR domain
TIR_2 PF13676 11 - 60 1.5e-06 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024699)

Species Orthologous Gene IDs
pyrus_communis pycom15g16100
rosa_multiflora Rmu_sc0000740.1_g000030 Rmu_sc0005002.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 19, 152
AciI CCGC 3 cut(s) 19, 100, 152
AfiI CCNNNNNNNGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 127
BccI CCATC 2 cut(s) 156, 185
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 19, 152
BshVI ATCGAT 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 3 cut(s) 19, 100, 152
BspDI ATCGAT 1 cut(s) 189
BspFNI CGCG 2 cut(s) 19, 152
BsrI ACTGG 1 cut(s) 117
BssMI GATC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 102
BstFNI CGCG 2 cut(s) 19, 152
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstUI CGCG 2 cut(s) 19, 152
BstV2I GAAGAC 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 189
CviJI RGCY 2 cut(s) 36, 178
CviKI_1 RGCY 2 cut(s) 36, 178
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 113, 155
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 159, 170
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 96
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 2 cut(s) 130, 164
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 4 cut(s) 89, 122, 127, 196
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 2 cut(s) 49, 65
MseI TTAA 1 cut(s) 140
MvnI CGCG 2 cut(s) 19, 152
NdeII GATC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 186
SchI GAGTC 1 cut(s) 122
SetI ASST 2 cut(s) 14, 180
SfaNI GCATC 1 cut(s) 31
SsiI CCGC 3 cut(s) 19, 100, 152
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 39, 90, 108, 189
TaqII GACCGA 1 cut(s) 115
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.