Rmu_sc0005002.1_g000006

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005002.1
Physical Location & Seq
Reverse (-)
31758 .. 32039
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005002.1_g000006.1.cds

Sequence Viewer

Length: 282 bp
atggcttcatcctcttccacaaagggaagttgggtgtacgacgtgttcttgagcttcggaggtgtagacacacgcaaaaacttcacgggccacctccacagcagattagttgcgtctggaatccattccttcatagaccacgaagaactaaggagaggggaagatatatcaacgcaattgatgagggcaatccaagggtctaggatctctctcatagtcttctcagcgaactatgcgagttcaaaatggtgtcttgatgaggtggtgaagatcatggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

6.9

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024699)

Species Orthologous Gene IDs
pyrus_communis pycom15g16100
rosa_multiflora Rmu_sc0000740.1_g000030 Rmu_sc0005002.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 243
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 211
BfaI CTAG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 237
BshFI GGCC 1 cut(s) 90
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 204, 270
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 236
BspPI GGATC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 204, 270
BssT1I CCWWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 149, 223
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 2 cut(s) 207, 273
BstMBI GATC 2 cut(s) 204, 270
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 1 cut(s) 90
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 5, 54, 90
CviKI_1 RGCY 3 cut(s) 5, 54, 90
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 149, 223
DpnI GATC 2 cut(s) 206, 272
DpnII GATC 2 cut(s) 204, 270
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 134, 167, 215, 234, 275
FatI CATG 1 cut(s) 273
FblI GTMKAC 1 cut(s) 66
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 277
HinfI GANTC 1 cut(s) 120
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 37, 67
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 49, 117, 254
Hpy8I GTNNAC 2 cut(s) 37, 67
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 149, 223
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 2 cut(s) 204, 270
LpnPI CCDG 1 cut(s) 102
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 206, 272
MboI GATC 2 cut(s) 204, 270
MboII GAAGA 5 cut(s) 6, 155, 173, 211, 280
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 176
MnlI CCTC 6 cut(s) 22, 53, 104, 149, 177, 253
MroXI GAANNNNTTC 1 cut(s) 124
MunI CAATTG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 204, 270
NlaIII CATG 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 88
PsrI GAACNNNNNNTAC 2 cut(s) 29, 61
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 204, 270
Sau96I GGNCC 1 cut(s) 88
SetI ASST 5 cut(s) 45, 56, 64, 96, 264
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 176
TfiI GAWTC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.