Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g00910 pycom15g16110 pycom15g16150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 178 |
| Acc36I | ACCTGC | 1 cut(s) | 178 |
| AciI | CCGC | 1 cut(s) | 40 |
| AclI | AACGTT | 1 cut(s) | 231 |
| AcsI | RAATTY | 2 cut(s) | 370, 390 |
| AflIII | ACRYGT | 1 cut(s) | 282 |
| AgsI | TTSAA | 3 cut(s) | 62, 184, 367 |
| AjiI | CACGTC | 1 cut(s) | 283 |
| AjnI | CCWGG | 1 cut(s) | 168 |
| AluBI | AGCT | 3 cut(s) | 329, 353, 379 |
| AluI | AGCT | 3 cut(s) | 329, 353, 379 |
| Ama87I | CYCGRG | 1 cut(s) | 241 |
| ApoI | RAATTY | 2 cut(s) | 370, 390 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaI | CYCGRG | 1 cut(s) | 241 |
| BciT130I | CCWGG | 1 cut(s) | 170 |
| BfuAI | ACCTGC | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 1 cut(s) | 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 241 |
| BmgBI | CACGTC | 1 cut(s) | 283 |
| BmrFI | CCNGG | 1 cut(s) | 170 |
| BmsI | GCATC | 2 cut(s) | 63, 285 |
| Bse1I | ACTGG | 2 cut(s) | 130, 439 |
| BseBI | CCWGG | 1 cut(s) | 170 |
| BseGI | GGATG | 2 cut(s) | 78, 300 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 2 cut(s) | 130, 439 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 277 |
| BsiHKCI | CYCGRG | 1 cut(s) | 241 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| BsoBI | CYCGRG | 1 cut(s) | 241 |
| Bsp143I | GATC | 1 cut(s) | 237 |
| BspACI | CCGC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspMI | ACCTGC | 1 cut(s) | 178 |
| BsrI | ACTGG | 2 cut(s) | 130, 439 |
| BssMI | GATC | 1 cut(s) | 237 |
| Bst2UI | CCWGG | 1 cut(s) | 170 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 1 cut(s) | 355 |
| BstDEI | CTNAG | 2 cut(s) | 207, 251 |
| BstF5I | GGATG | 2 cut(s) | 78, 300 |
| BstKTI | GATC | 1 cut(s) | 240 |
| BstMBI | GATC | 1 cut(s) | 237 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 359 |
| BstNI | CCWGG | 1 cut(s) | 170 |
| BstSCI | CCNGG | 1 cut(s) | 168 |
| BtgZI | GCGATG | 1 cut(s) | 313 |
| BtrI | CACGTC | 1 cut(s) | 283 |
| BtsCI | GGATG | 2 cut(s) | 78, 300 |
| BveI | ACCTGC | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 1 cut(s) | 355 |
| CciI | TCATGA | 1 cut(s) | 394 |
| CsiI | ACCWGGT | 1 cut(s) | 168 |
| CviAII | CATG | 2 cut(s) | 107, 395 |
| CviJI | RGCY | 7 cut(s) | 66, 220, 275, 319, 329, 353, 379 |
| CviKI_1 | RGCY | 7 cut(s) | 66, 220, 275, 319, 329, 353, 379 |
| DdeI | CTNAG | 2 cut(s) | 207, 251 |
| DpnI | GATC | 1 cut(s) | 239 |
| DpnII | GATC | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 241 |
| EcoRII | CCWGG | 1 cut(s) | 168 |
| EcoT22I | ATGCAT | 1 cut(s) | 445 |
| FaeI | CATG | 2 cut(s) | 110, 398 |
| FaiI | YATR | 4 cut(s) | 108, 147, 396, 445 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FatI | CATG | 2 cut(s) | 106, 394 |
| FauI | CCCGC | 1 cut(s) | 33 |
| FokI | GGATG | 2 cut(s) | 85, 307 |
| Hin1II | CATG | 2 cut(s) | 110, 398 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 1 cut(s) | 413 |
| Hpy188III | TCNNGA | 4 cut(s) | 11, 91, 241, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 413 |
| HpyAV | CCTTC | 2 cut(s) | 88, 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4IV | ACGT | 2 cut(s) | 231, 282 |
| HpyCH4V | TGCA | 3 cut(s) | 258, 357, 443 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 359 |
| HpyF3I | CTNAG | 2 cut(s) | 207, 251 |
| HpySE526I | ACGT | 2 cut(s) | 231, 282 |
| Hsp92II | CATG | 2 cut(s) | 110, 398 |
| Kzo9I | GATC | 1 cut(s) | 237 |
| LmnI | GCTCC | 1 cut(s) | 376 |
| LpnPI | CCDG | 9 cut(s) | 111, 155, 173, 182, 202, 219, 244, 333, 420 |
| LweI | GCATC | 2 cut(s) | 63, 285 |
| MabI | ACCWGGT | 1 cut(s) | 168 |
| MaeII | ACGT | 2 cut(s) | 231, 282 |
| MaeIII | GTNAC | 3 cut(s) | 152, 227, 232 |
| MalI | GATC | 1 cut(s) | 239 |
| MboI | GATC | 1 cut(s) | 237 |
| MluCI | AATT | 3 cut(s) | 129, 370, 390 |
| MnlI | CCTC | 5 cut(s) | 78, 237, 255, 262, 265 |
| Mph1103I | ATGCAT | 1 cut(s) | 445 |
| MspR9I | CCNGG | 1 cut(s) | 170 |
| MvaI | CCWGG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 359 |
| NdeII | GATC | 1 cut(s) | 237 |
| NlaIII | CATG | 2 cut(s) | 110, 398 |
| NsiI | ATGCAT | 1 cut(s) | 445 |
| PaeR7I | CTCGAG | 1 cut(s) | 241 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PaqCI | CACCTGC | 1 cut(s) | 178 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 295 |
| Psp1406I | AACGTT | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 168 |
| PspGI | CCWGG | 1 cut(s) | 168 |
| Sau3AI | GATC | 1 cut(s) | 237 |
| ScrFI | CCNGG | 1 cut(s) | 170 |
| SexAI | ACCWGGT | 1 cut(s) | 168 |
| SfaNI | GCATC | 2 cut(s) | 63, 285 |
| Sfr274I | CTCGAG | 1 cut(s) | 241 |
| SlaI | CTCGAG | 1 cut(s) | 241 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| Sse9I | AATT | 3 cut(s) | 129, 370, 390 |
| SsiI | CCGC | 1 cut(s) | 40 |
| SspI | AATATT | 1 cut(s) | 401 |
| StyD4I | CCNGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaiI | ACGT | 2 cut(s) | 234, 285 |
| TaqI | TCGA | 2 cut(s) | 26, 242 |
| TasI | AATT | 3 cut(s) | 129, 370, 390 |
| TspDTI | ATGAA | 5 cut(s) | 95, 213, 339, 383, 411 |
| XapI | RAATTY | 2 cut(s) | 370, 390 |
| XhoI | CTCGAG | 1 cut(s) | 241 |
| Zsp2I | ATGCAT | 1 cut(s) | 445 |