Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022563

Physical Location & Seq

Genomic Coordinates Forward (+)

12541438 .. 12542951

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17650.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTAGGTACCCACTTAAACCTGATTGCGCCGATTTCTCCTTCCCTCTGTCGACTCTCTTGCCTCCACCCCTCTCCTTCCCTCCCCGTCACCGACTTATTGAAGGTAGCATCTAGAAAGCTTATTTTTGCAGCAAAGTCCCACTCAGTATCGACAATGGCAACTGAAGAAGAGAATGTGGGAAATGCAAGGCAACAGTTGGCAAAACTGTTTGAAGTATCGCTCAGGAGAATAGTCCCTGACGAGCAAGATGTCGCGCCAGTGATTGCTGCTTCAACTGGGAAGTTTGGCGATTATCAATGTAACAATGCCATGGGTCTATGGTCTAAAATAAAGGGAAAGGGGAGTGAGTTCAGGGGTCCTCCATCTGTTGGGCAGGCAATCATGAAAAATCTTCCTGATTCGGAGATCATAGAATCTTGTTCTGTAGCAGGACCTGGATTTGTGAATGTTGTCTTGTCAAAGAAATGGTTGGCTAAGAGAATACAAAAGATGCTTATTGATGGTATCGAGAAATGGGCGCCACAGCTACCGATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

181

Amino Acids

19.52

Weight (kDa)

9.39

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022563)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g17650
rosa_samantha	Rh3BG062700 Rh3CG061500 Rh3DG062400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	8
AccB1I	GGYRCC	2 cut(s)	8, 520
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	103, 215, 276
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	121, 529
AluI	AGCT	2 cut(s)	121, 529
AlwNI	CAGNNNCTG	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	131, 269
Asp718I	GGTACC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	31, 259, 523
AspS9I	GGNCC	2 cut(s)	359, 434
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	359, 434
BanI	GGYRCC	2 cut(s)	8, 520
BbvI	GCAGC	2 cut(s)	143, 256
BccI	CCATC	2 cut(s)	373, 497
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	1 cut(s)	438
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	524
BisI	GCNGC	2 cut(s)	132, 270
BlsI	GCNGC	2 cut(s)	133, 271
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	2 cut(s)	359, 434
BmgT120I	GGNCC	2 cut(s)	359, 434
BmiI	GGNNCC	3 cut(s)	10, 360, 522
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	119, 483
BmuI	ACTGGG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	260, 283
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	159, 238
BseNI	ACTGG	2 cut(s)	260, 283
BseXI	GCAGC	2 cut(s)	143, 256
Bsh1236I	CGCG	1 cut(s)	257
BshNI	GGYRCC	2 cut(s)	8, 520
BslFI	GGGAC	2 cut(s)	124, 221
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	2 cut(s)	124, 221
Bsp143I	GATC	2 cut(s)	408, 534
Bsp19I	CCATGG	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	158, 237
BspFNI	CGCG	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	10, 360, 522
BspT107I	GGYRCC	2 cut(s)	8, 520
BsrI	ACTGG	2 cut(s)	260, 283
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	408, 534
BssNI	GRCGYC	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	198, 210
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	145, 224, 477
BstDSI	CCRYGG	1 cut(s)	312
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	3 cut(s)	31, 259, 523
BstKTI	GATC	2 cut(s)	411, 537
BstMBI	GATC	2 cut(s)	408, 534
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	143, 256
BtgI	CCRYGG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	3 cut(s)	31, 259, 523
Cfr13I	GGNCC	2 cut(s)	359, 434
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	313, 385
CviJI	RGCY	3 cut(s)	121, 476, 529
CviKI_1	RGCY	3 cut(s)	121, 476, 529
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	3 cut(s)	145, 224, 477
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	2 cut(s)	410, 536
DpnII	GATC	2 cut(s)	408, 534
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	359, 434
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	2 cut(s)	359, 434
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	316, 388
FaiI	YATR	4 cut(s)	314, 322, 386, 413
FaqI	GGGAC	2 cut(s)	124, 221
FatI	CATG	2 cut(s)	312, 384
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	132, 270
Fsp4HI	GCNGC	2 cut(s)	132, 270
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	3 cut(s)	30, 258, 522
GluI	GCNGC	2 cut(s)	132, 270
HaeII	RGCGCY	1 cut(s)	524
HhaI	GCGC	3 cut(s)	31, 259, 523
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	316, 388
Hin6I	GCGC	3 cut(s)	29, 257, 521
HinP1I	GCGC	3 cut(s)	29, 257, 521
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	54, 401, 416
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	5 cut(s)	114, 226, 385, 398, 511
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	51, 87, 97
HpyCH4III	ACNGT	2 cut(s)	198, 210
HpyCH4V	TGCA	2 cut(s)	131, 188
HpyF3I	CTNAG	3 cut(s)	145, 224, 477
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	316, 388
HspAI	GCGC	3 cut(s)	29, 257, 521
KasI	GGCGCC	1 cut(s)	520
KpnI	GGTACC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	408, 534
Lsp1109I	GCAGC	2 cut(s)	143, 256
LweI	GCATC	2 cut(s)	119, 483
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	88, 302
MalI	GATC	2 cut(s)	410, 536
MboI	GATC	2 cut(s)	408, 534
MboII	GAAGA	3 cut(s)	179, 182, 386
Mly113I	GGCGCC	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	56, 74, 82, 92, 372
MseI	TTAA	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	257
NarI	GGCGCC	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	408, 534
NlaIII	CATG	2 cut(s)	316, 388
NlaIV	GGNNCC	3 cut(s)	10, 360, 522
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	401, 416
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	133, 271
PleI	GAGTC	1 cut(s)	48
PluTI	GGCGCC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	48
PpuMI	RGGWCCY	2 cut(s)	359, 434
Psp5II	RGGWCCY	2 cut(s)	359, 434
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	10, 360, 522
PspPI	GGNCC	2 cut(s)	359, 434
PspPPI	RGGWCCY	2 cut(s)	359, 434
PstNI	CAGNNNCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	132, 270
Sau3AI	GATC	2 cut(s)	408, 534
Sau96I	GGNCC	2 cut(s)	359, 434
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	6 cut(s)	10, 24, 108, 123, 439, 531
SfaNI	GCATC	2 cut(s)	119, 483
SfcI	CTRYAG	1 cut(s)	426
SfoI	GGCGCC	1 cut(s)	522
SinI	GGWCC	2 cut(s)	359, 434
SspDI	GGCGCC	1 cut(s)	520
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	198, 210
TaqI	TCGA	3 cut(s)	52, 152, 510
TfiI	GAWTC	2 cut(s)	401, 416
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	131, 269
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	359, 434
XbaI	TCTAGA	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.