Rh3BG062700

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
4204260 .. 4204508
249 bp
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UTR
Exon/CDS
Intron
Rh3BG062700.1

Sequence Viewer

Length: 249 bp
ATGGCAGCTGGAGGAGAGAATGTGGCGAGTTTGAAGCGGCAGTTAGTGCAACTGTTTGAAGTGTCGATTGGAACAGTGGTGCCTGATGAGCTGAATGTGGAGCCGGTGGTTGTTCCTTCGGCTGTGAAATTCGGAGACTATCAATGTAACAATGCCATGGACATATGGTCTAAGATTGAGGGAAAGGGAACTGCATTCGAGAATCTTAATTCTGTTGGACAGGCCATCGATTTCCTAAATCAGAAATAA

Protein Analysis

82

Amino Acids

8.84

Weight (kDa)

4.5

Isoelectric Point (pI)

24.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022563)

Species Orthologous Gene IDs
pyrus_communis pycom15g17650
rosa_samantha Rh3BG062700 Rh3CG061500 Rh3DG062400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 128
AgsI TTSAA 2 cut(s) 34, 59
AhdI GACNNNNNGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 8, 91
AluI AGCT 2 cut(s) 8, 91
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 128
BanI GGYRCC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 129
BisI GCNGC 2 cut(s) 6, 38
BlsI GCNGC 2 cut(s) 7, 39
BmeRI GACNNNNNGTC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 81, 102
BpmI CTGGAG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse118I RCCGGY 1 cut(s) 103
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 1 cut(s) 224
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 81, 102
BspT107I GGYRCC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 54, 76
BstAPI GCANNNNNTGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 46, 88
BstV1I GCAGC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 224
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 228
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 8, 91, 103, 122, 224
CviKI_1 RGCY 5 cut(s) 8, 91, 103, 122, 224
DdeI CTNAG 1 cut(s) 171
DriI GACNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 158, 164, 166
FatI CATG 1 cut(s) 156
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 6, 38
Fsp4HI GCNGC 2 cut(s) 6, 38
GluI GCNGC 2 cut(s) 6, 38
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 134, 243
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 54, 76
HpyCH4V TGCA 2 cut(s) 49, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 88
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 1 cut(s) 160
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 96, 117, 206
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 146
MluCI AATT 2 cut(s) 128, 208
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 2 cut(s) 5, 172
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 46, 88
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 164
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 81, 102
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 7, 39
PspN4I GGNNCC 2 cut(s) 81, 102
PvuII CAGCTG 1 cut(s) 8
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 6, 38
SetI ASST 2 cut(s) 10, 93
SgeI CNNG 7 cut(s) 21, 39, 95, 116, 169, 211, 233
Sse9I AATT 2 cut(s) 128, 208
SsiI CCGC 1 cut(s) 37
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 54, 76
TaqI TCGA 3 cut(s) 65, 198, 228
TasI AATT 2 cut(s) 128, 208
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 5
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.