pycom15g18210

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029462
Physical Location & Seq
Forward (+)
12913199 .. 12913795
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18210.1

Sequence Viewer

Length: 597 bp
ATGGGAGTGAGCAACAGGATAACTGCTGCCCTCAACTTCATAGCCCTCCTCTGCGCCATCCCAATAATGTCCGCCGGCATCTGGCTGGCCTCCAAGCCGGACAACGAGTGCATCCGCTCGTTCCGGTGGCCGGTCTTCATCCTCGGCGTACTCATGCTGTTCGTCTCCCTTGCCGGCTTCATTGGCGCCTATTTTAACAAACAGGGCCTTCTGGCTCTCTACCTCTTCTGCATGGCTGCTCTCATAATCCTGCTCCTTGTCCTGCTCATCTTCGCCTTCACCGTCACGAGGCCCGACGGCAGCTACGCCGTGCCCGGCAGGGGTTACAGGGAGTACCGGCTTGACGGGTTTTCGAAGTGGCTGAGGGACTATGTGAGGGATTCTTCGAATTGGCAGAAGATAAGGAATTGTTTGGCTGACTCTGATACTTGTCCTAAGCTTACACAGCAGTACATGTCGGCTGATCAGTTCTTCTTTGCTCACATCTCTCCTCTCCAGGCAAGTTTCTCTCTCCAAATTTTTAAAGAGATTCTTTTTCTTTTTTCTCAATTTTTTGAGAAAGATGACTTTTTAACTGCCTTGAGTAACTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

8.62

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 7 - 153 4e-24 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029462)

Species Orthologous Gene IDs
pyrus_communis pycom15g18210
rosa_samantha Rh2BG079600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 2 cut(s) 72, 115
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 3 cut(s) 150, 335, 452
AfiI CCNNNNNNNGG 4 cut(s) 81, 130, 288, 320
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 1 cut(s) 592
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 2 cut(s) 303, 439
AluI AGCT 2 cut(s) 303, 439
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 4 cut(s) 87, 128, 205, 290
ApeKI GCWGC 3 cut(s) 26, 236, 300
ApoI RAATTY 1 cut(s) 516
AspLEI GCGC 2 cut(s) 56, 188
AspS9I GGNCC 2 cut(s) 205, 291
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 2 cut(s) 353, 386
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 185
BauI CACGAG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 13, 223, 312
BccI CCATC 1 cut(s) 65
BceAI ACGGC 2 cut(s) 293, 313
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 3 cut(s) 27, 237, 301
BlsI GCNGC 3 cut(s) 28, 238, 302
Bme1390I CCNGG 2 cut(s) 315, 497
BmgT120I GGNCC 2 cut(s) 205, 291
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 315, 497
BmsI GCATC 2 cut(s) 87, 120
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 2 cut(s) 362, 435
Bpu14I TTCGAA 2 cut(s) 353, 386
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 130, 288, 320
Bse118I RCCGGY 4 cut(s) 74, 130, 173, 336
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 3 cut(s) 57, 111, 138
BseLI CCNNNNNNNGG 4 cut(s) 81, 130, 288, 320
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 38, 480
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 3 cut(s) 13, 223, 312
BshFI GGCC 4 cut(s) 89, 130, 207, 292
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 7 cut(s) 75, 98, 124, 131, 174, 315, 337
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 81, 130, 288, 320
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 4 cut(s) 89, 130, 207, 292
Bsp119I TTCGAA 2 cut(s) 353, 386
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 2 cut(s) 72, 115
BspANI GGCC 4 cut(s) 89, 130, 207, 292
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 187
BspT104I TTCGAA 2 cut(s) 353, 386
BspT107I GGYRCC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 117
BsrFI RCCGGY 4 cut(s) 74, 130, 173, 336
BssAI RCCGGY 4 cut(s) 74, 130, 173, 336
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 463
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 186
BstBI TTCGAA 2 cut(s) 353, 386
BstC8I GCNNGC 3 cut(s) 76, 87, 175
BstDEI CTNAG 2 cut(s) 362, 435
BstF5I GGATG 3 cut(s) 57, 111, 138
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 56, 188
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 2 cut(s) 183, 445
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 313, 495
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 13, 223, 312
BstV2I GAAGAC 1 cut(s) 127
BsuRI GGCC 4 cut(s) 89, 130, 207, 292
BtsCI GGATG 3 cut(s) 57, 111, 138
Cac8I GCNNGC 3 cut(s) 76, 87, 175
CfoI GCGC 2 cut(s) 56, 188
Cfr10I RCCGGY 4 cut(s) 74, 130, 173, 336
Cfr13I GGNCC 2 cut(s) 205, 291
Csp6I GTAC 3 cut(s) 149, 334, 451
CviAII CATG 3 cut(s) 154, 232, 454
CviQI GTAC 3 cut(s) 149, 334, 451
DdeI CTNAG 2 cut(s) 362, 435
DinI GGCGCC 1 cut(s) 187
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 495
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 3 cut(s) 157, 235, 457
FaiI YATR 6 cut(s) 41, 155, 233, 245, 372, 455
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 153, 231, 453
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 3 cut(s) 27, 237, 301
FokI GGATG 3 cut(s) 44, 98, 125
Fsp4HI GCNGC 3 cut(s) 27, 237, 301
GlaI GCGC 2 cut(s) 55, 187
GluI GCNGC 3 cut(s) 27, 237, 301
GsuI CTGGAG 1 cut(s) 479
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 4 cut(s) 89, 130, 207, 292
HapII CCGG 7 cut(s) 75, 98, 124, 131, 174, 315, 337
HhaI GCGC 2 cut(s) 56, 188
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 157, 235, 457
Hin6I GCGC 2 cut(s) 54, 186
HinP1I GCGC 2 cut(s) 54, 186
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 380, 419, 529
HpaII CCGG 7 cut(s) 75, 98, 124, 131, 174, 315, 337
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 218, 286
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 111, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 445
HpyF3I CTNAG 2 cut(s) 362, 435
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 157, 235, 457
HspAI GCGC 2 cut(s) 54, 186
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 2 cut(s) 74, 173
KroNI GCCGGC 2 cut(s) 76, 175
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 3 cut(s) 13, 223, 312
LweI GCATC 2 cut(s) 87, 120
MaeIII GTNAC 3 cut(s) 283, 323, 584
MalI GATC 1 cut(s) 465
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 463
MboII GAAGA 6 cut(s) 127, 217, 262, 375, 409, 463
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 5 cut(s) 388, 406, 516, 548, 592
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 413
MroNI GCCGGC 2 cut(s) 74, 173
MseI TTAA 3 cut(s) 195, 522, 572
MspI CCGG 7 cut(s) 75, 98, 124, 131, 174, 315, 337
MspR9I CCNGG 2 cut(s) 315, 497
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 183, 445
NaeI GCCGGC 2 cut(s) 76, 175
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 463
NgoMIV GCCGGC 2 cut(s) 74, 173
NlaIII CATG 3 cut(s) 157, 235, 457
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 457
NspV TTCGAA 2 cut(s) 353, 386
PciI ACATGT 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdiI GCCGGC 2 cut(s) 76, 175
PfeI GAWTC 2 cut(s) 380, 529
PkrI GCNGC 3 cut(s) 28, 238, 302
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 413
PscI ACATGT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 205, 291
RsaI GTAC 3 cut(s) 150, 335, 452
RsaNI GTAC 3 cut(s) 149, 334, 451
SaqAI TTAA 3 cut(s) 195, 522, 572
SatI GCNGC 3 cut(s) 27, 237, 301
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 2 cut(s) 205, 291
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 315, 497
SduI GDGCHC 1 cut(s) 315
SetI ASST 3 cut(s) 225, 305, 441
SfaNI GCATC 2 cut(s) 87, 120
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 2 cut(s) 353, 386
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 5 cut(s) 388, 406, 516, 548, 592
SsiI CCGC 2 cut(s) 72, 115
SspDI GGCGCC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 313, 495
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 353, 386
TasI AATT 5 cut(s) 388, 406, 516, 548, 592
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 380, 529
Tru1I TTAA 3 cut(s) 195, 522, 572
Tru9I TTAA 3 cut(s) 195, 522, 572
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 26, 236, 300
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 28, 127, 169
XapI RAATTY 1 cut(s) 516
XceI RCATGY 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.