pycom15g19130

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028405
Physical Location & Seq
Forward (+)
13638345 .. 13639566
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGGAAGGATTATCAATCCTGCTTTCCACTTGGAAAGACTCAAGGGTTTTCAAGCTTCAGAAAGAGCTTCTAGTGGTTGATGACTTTCTAGGAGTGCTCTTGCGGTCTAATAACCAGAAGGATTCATCAGAAAATGCAAGCAACACGAAAAGCAACGAGGTATCTGACACCATGCACCCAGACTGGCAAGAGAAGGCAAGGCAAGAAGTCCTTCAAGTTTGTGGGAAAAATGAACCTGATTTTGAAGCCATAAGCCACTTGAAGATGGTAACCAATATACTTAATGAAGTTCTAAGGCTGTATCTGCAGGCGATACCTGGGTACCAACACACTTACAAGGAAACCAAAATCAGAGATCGATCACTATTCCGGCAGGAGTTGACATTACTCTCCCAACCCTACTCATTCACCATCGATCCCTGGCTGTGGGGTGATGATGCAGGGGAATTCAAGCCGGAGAGATTCTCTGAAGGAGTCTCCAAGGCATCGAGGGGCCACCAGCAAGCGTTCTTTCCATTTGGATGGGGTCCAAGGACATGCATGGGCCAGAATTTCGCCATAATGGGAGCAAAGGTTGCTTTGGCTATACTTCTGCAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00908 ko01100 ko01110 map00908 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

6.22

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 59 - 200 4.4e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028405)

Species Orthologous Gene IDs
malus_domestica MD15G1215600.v1.1
pyrus_communis pycom15g19130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 2 cut(s) 446, 550
AcuI CTGAAG 2 cut(s) 41, 489
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 5 cut(s) 52, 215, 245, 262, 451
AjnI CCWGG 2 cut(s) 316, 419
AluBI AGCT 2 cut(s) 55, 67
AluI AGCT 2 cut(s) 55, 67
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 493, 544
ApoI RAATTY 2 cut(s) 446, 550
Asp700I GAANNNNTTC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 493, 527, 544
AsuHPI GGTGA 2 cut(s) 400, 443
AvaII GGWCC 1 cut(s) 527
BaeI ACNNNNGTAYC 4 cut(s) 305, 305, 338, 338
BanI GGYRCC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 3 cut(s) 259, 419, 516
BciT130I CCWGG 2 cut(s) 318, 421
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 3 cut(s) 71, 89, 601
BfmI CTRYAG 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 318, 421
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 3 cut(s) 493, 527, 544
BmiI GGNNCC 3 cut(s) 323, 494, 528
BmrFI CCNGG 2 cut(s) 318, 421
BmsI GCATC 2 cut(s) 427, 494
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpuEI CTTGAG 1 cut(s) 25
Bsa29I ATCGAT 2 cut(s) 358, 414
BsaJI CCNNGG 4 cut(s) 317, 419, 480, 530
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 318, 421
BseCI ATCGAT 2 cut(s) 358, 414
BseDI CCNNGG 4 cut(s) 317, 419, 480, 530
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 2 cut(s) 495, 546
BshNI GGYRCC 1 cut(s) 321
BshVI ATCGAT 2 cut(s) 358, 414
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 370, 455
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 481
BsnI GGCC 2 cut(s) 495, 546
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 355, 359, 415
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 495, 546
BspDI ATCGAT 2 cut(s) 358, 414
BspLI GGNNCC 3 cut(s) 323, 494, 528
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 317, 419, 480, 530
BssMI GATC 3 cut(s) 355, 359, 415
BssT1I CCWWGG 2 cut(s) 480, 530
Bst2UI CCWGG 2 cut(s) 318, 421
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 139, 309, 504
BstDEI CTNAG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 527
BstKTI GATC 3 cut(s) 358, 362, 418
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 3 cut(s) 355, 359, 415
BstMWI GCNNNNNNNGC 2 cut(s) 304, 575
BstNI CCWGG 2 cut(s) 318, 421
BstNSI RCATGY 1 cut(s) 540
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 316, 419
BstSFI CTRYAG 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 522
Bsu15I ATCGAT 2 cut(s) 358, 414
BsuRI GGCC 2 cut(s) 495, 546
BsuTUI ATCGAT 2 cut(s) 358, 414
BtsCI GGATG 1 cut(s) 527
Cac8I GCNNGC 3 cut(s) 139, 309, 504
Cfr13I GGNCC 3 cut(s) 493, 527, 544
ClaI ATCGAT 2 cut(s) 358, 414
Csp6I GTAC 1 cut(s) 322
CviAII CATG 3 cut(s) 172, 537, 541
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 357, 361, 417
DpnII GATC 3 cut(s) 355, 359, 415
Eco130I CCWWGG 2 cut(s) 480, 530
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 41, 489
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 316, 419
EcoT14I CCWWGG 2 cut(s) 480, 530
EcoT22I ATGCAT 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 480, 530
FaeI CATG 3 cut(s) 175, 540, 544
FaiI YATR 7 cut(s) 173, 251, 278, 538, 542, 560, 587
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 3 cut(s) 171, 536, 540
FokI GGATG 1 cut(s) 534
FspBI CTAG 3 cut(s) 71, 89, 601
HaeIII GGCC 2 cut(s) 495, 546
HapII CCGG 2 cut(s) 370, 455
Hin1II CATG 3 cut(s) 175, 540, 544
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 38, 122, 462, 474
HpaII CCGG 2 cut(s) 370, 455
HphI GGTGA 2 cut(s) 400, 443
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 5 cut(s) 60, 130, 166, 353, 469
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 4 cut(s) 112, 187, 221, 464
HpyCH4V TGCA 6 cut(s) 137, 175, 307, 440, 540, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 575
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 3 cut(s) 175, 540, 544
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 355, 359, 415
LmnI GCTCC 1 cut(s) 566
LweI GCATC 2 cut(s) 427, 494
MaeI CTAG 3 cut(s) 71, 89, 601
MaeIII GTNAC 1 cut(s) 268
MalI GATC 3 cut(s) 357, 361, 417
MboI GATC 3 cut(s) 355, 359, 415
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 446, 550
MlyI GAGTC 2 cut(s) 32, 483
MnlI CCTC 2 cut(s) 151, 483
Mph1103I ATGCAT 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 520
MspI CCGG 2 cut(s) 370, 455
MspR9I CCNGG 2 cut(s) 318, 421
MvaI CCWGG 2 cut(s) 318, 421
MwoI GCNNNNNNNGC 2 cut(s) 304, 575
NdeII GATC 3 cut(s) 355, 359, 415
NlaIII CATG 3 cut(s) 175, 540, 544
NlaIV GGNNCC 3 cut(s) 323, 494, 528
NsiI ATGCAT 1 cut(s) 542
NspI RCATGY 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 122, 462
PleI GAGTC 2 cut(s) 32, 482
PpsI GAGTC 2 cut(s) 32, 482
Psp6I CCWGG 2 cut(s) 316, 419
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 2 cut(s) 316, 419
PspN4I GGNNCC 3 cut(s) 323, 494, 528
PspPI GGNCC 3 cut(s) 493, 527, 544
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 3 cut(s) 355, 359, 415
Sau96I GGNCC 3 cut(s) 493, 527, 544
SchI GAGTC 2 cut(s) 32, 483
ScrFI CCNGG 2 cut(s) 318, 421
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 57, 69, 162, 238, 319, 576
SfaNI GCATC 2 cut(s) 427, 494
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 2 cut(s) 446, 550
SsiI CCGC 1 cut(s) 103
SspMI CTAG 3 cut(s) 71, 89, 601
StyD4I CCNGG 2 cut(s) 316, 419
StyI CCWWGG 2 cut(s) 480, 530
TaqI TCGA 3 cut(s) 358, 414, 488
TasI AATT 2 cut(s) 446, 550
TfiI GAWTC 2 cut(s) 122, 462
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 3 cut(s) 114, 246, 300
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 2 cut(s) 446, 550
XceI RCATGY 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 3 cut(s) 71, 89, 601
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.