Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024616

Physical Location & Seq

Genomic Coordinates Forward (+)

14266808 .. 14269005

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCCCGATCAGAGCTGTAGGGTATGTTATGCCTGTGACTCTCAGTTCACAATATTTAACCGAAGGCATCATTGTCGACTTTGTGGCCGAGTTTTCTGTGCCAAGTGTACTGCAAACTCTATTCCTGCGGCATCTGATGAGCCAAGGGTTGGAAGGGAAGATTGGGAACGGATTAGGGTCTGTAATTATTGCTTCCAGCAATGGGAGCAAGGGGTAGCCGCACCCAATAATGCTGCCACCCCCGCAGCCAGCCCTGGTCTCAGTCCATCACCATCCGTGACAAGTTTGGCAAGCACCAAGTCCAGCTGCACCTGCCACAGCAGCAGCAGCACTATTGGTTCTACCCCTTATTCGACTGGACCTTACCAGCGTGTGCCATATAGTTCTGGTCAGAGCCCTAGTCAATCATCTTCCGAAATTTATTCAGTTCCGGTACAGCCAGACATTGTGACATCGCAGACGAGCATTAGTTCTGATGTAGCCATGGCCGAGCCGTCTCCAAATCTATATGGCTTTTGTATGAACAGGAGTGATGACGAGGATGATGACTATGGAGTTTATCGTTTAGATTCAGAACCAAGTCATTTCTCTCATGGCAATGACTATTATGGTGCAGTCACTATCGAGGAATTTGCTAGCGTCTATGGACCCCAGAATGTGCATCTTGATGGAGATAACACGAGTTCCTTCTTACCTGGGAGTTTTGATACACAGGATGTAGTGGGAATTCAGAAAATTGAGGAAGATCAATATGAACACGATAACGATGATGAATGTGGAACTTCTCCATATGACCTGCAAAGCACGAATACCGAACCTGTGGATTTCGAGAACAATGGGCTACTTTGGCTCCCTCCGGAGCCTGAGGATGAAGAAGATGAGAGAGAAGCTGTCTTATTTGATGACGACGATTATGATGGTGGTAGTTCTGGTGGTGGTGCAGGGGAGTGGGGATATCTGGGTTCTTCAAATGGCTTTGGTAATGGGGAGTGTCGTACGAGGGAGAAATCAATTGAGGAGCACAGGAAGGCAATGAAGAATGTGGTGGAAGGTCATTTTAGGGCTTTGGTATCTCAGCTTTTGCAGGTTGAAAACCTACCACGGGGTGATGAAGGCAACAATGAGAGTTGGTTGGACATAATTACTTCGTTGTCTTGGGAAGCTGCCATGCTTCTCAAGCCAGATACGAGCAAGGGTGGAGGAATGGACCCTGGGGGATACGTGAAGGTTAAATGTATAGCTTGCGGGCGTCGAATTGATAGTATGGTGGTAAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGGCGAATGACATCACAAAAAGAAAAACCACGCTTTTTAATCCTTGGAGGAGCTTTGGAATATCAGCGTGTTTCAAACCTCTTGTCAAGTTTTGATACGTTGTTGCAGCAGGAAATGGATCGATCTGAAAATGGCAGTTGCAAAGATAGACTCGCATCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

490

Amino Acids

53.67

Weight (kDa)

4.63

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024616)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08160 pycom15g19920
rosa_multiflora	Rmu_sc0005612.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	3 cut(s)	320, 804, 1075
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	4 cut(s)	128, 219, 243, 1245
AclWI	GGATC	1 cut(s)	1431
AcoI	YGGCCR	2 cut(s)	85, 486
AcsI	RAATTY	3 cut(s)	417, 629, 726
AcyI	GRCGYC	1 cut(s)	1249
AdeI	CACNNNGTG	1 cut(s)	1106
AfaI	GTAC	3 cut(s)	109, 435, 997
AfiI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
AgsI	TTSAA	3 cut(s)	969, 1091, 1380
AjnI	CCWGG	3 cut(s)	253, 694, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	7 cut(s)	15, 306, 890, 1078, 1163, 1241, 1358
AluI	AGCT	7 cut(s)	15, 306, 890, 1078, 1163, 1241, 1358
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	2 cut(s)	263, 501
AlwI	GGATC	1 cut(s)	1431
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	2 cut(s)	85, 486
ApeKI	GCWGC	8 cut(s)	233, 245, 306, 321, 324, 327, 1163, 1411
ApoI	RAATTY	3 cut(s)	417, 629, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
AspS9I	GGNCC	3 cut(s)	359, 647, 1207
AsuHPI	GGTGA	3 cut(s)	261, 1118, 1455
AsuNHI	GCTAGC	1 cut(s)	635
AvaII	GGWCC	3 cut(s)	359, 647, 1207
AxyI	CCTNAGG	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	398
BauI	CACGAG	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	1023
BbvI	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
BccI	CCATC	4 cut(s)	274, 280, 662, 911
BceAI	ACGGC	1 cut(s)	478
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 614, 648
BciT130I	CCWGG	3 cut(s)	255, 696, 1212
BciVI	GTATCC	1 cut(s)	1211
BcoDI	GTCTC	2 cut(s)	263, 501
BfaI	CTAG	2 cut(s)	399, 636
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	3 cut(s)	320, 804, 1075
BfuI	GTATCC	1 cut(s)	1211
Bme1390I	CCNGG	3 cut(s)	255, 696, 1212
Bme18I	GGWCC	3 cut(s)	359, 647, 1207
BmgT120I	GGNCC	3 cut(s)	359, 647, 1207
BmiI	GGNNCC	4 cut(s)	649, 851, 861, 1209
BmrFI	CCNGG	3 cut(s)	255, 696, 1212
BmsI	GCATC	3 cut(s)	76, 140, 670
BmtI	GCTAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	1160
Bsa29I	ATCGAT	1 cut(s)	1426
BsaAI	YACGTR	1 cut(s)	1222
BsaHI	GRCGYC	1 cut(s)	1249
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BsaWI	WCCGGW	2 cut(s)	430, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
Bse1I	ACTGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	3 cut(s)	206, 604, 1038
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	255, 696, 1212
BseCI	ATCGAT	1 cut(s)	1426
BseDI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BseGI	GGATG	4 cut(s)	272, 547, 721, 874
BseLI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
BseMI	GCAATG	3 cut(s)	206, 604, 1038
BseMII	CTCAG	4 cut(s)	56, 274, 855, 1088
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	1031, 1368
BseXI	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
BsgI	GTGCAG	3 cut(s)	292, 633, 960
BshFI	GGCC	2 cut(s)	87, 488
BshVI	ATCGAT	1 cut(s)	1426
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiSI	CCGG	2 cut(s)	431, 857
BsiWI	CGTACG	1 cut(s)	995
BslI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
BsmAI	GTCTC	2 cut(s)	263, 501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	87, 488
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	398, 1023
Bsp13I	TCCGGA	1 cut(s)	856
Bsp143I	GATC	4 cut(s)	7, 745, 1423, 1427
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	128, 219, 243, 1245
BspANI	GGCC	2 cut(s)	87, 488
BspCNI	CTCAG	4 cut(s)	55, 273, 856, 1087
BspDI	ATCGAT	1 cut(s)	1426
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	4 cut(s)	649, 851, 861, 1209
BspMI	ACCTGC	3 cut(s)	320, 804, 1075
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	1431
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	206, 604, 1038
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BssMI	GATC	4 cut(s)	7, 745, 1423, 1427
BssNI	GRCGYC	1 cut(s)	1249
BssSI	CACGAG	1 cut(s)	679
BssT1I	CCWWGG	3 cut(s)	143, 483, 1348
Bst2BI	CACGAG	1 cut(s)	679
Bst2UI	CCWGG	3 cut(s)	255, 696, 1212
BstACI	GRCGYC	1 cut(s)	1249
BstBAI	YACGTR	1 cut(s)	1222
BstC8I	GCNNGC	5 cut(s)	250, 292, 637, 1243, 1247
BstDEI	CTNAG	4 cut(s)	42, 260, 864, 1074
BstDSI	CCRYGG	2 cut(s)	483, 1100
BstF5I	GGATG	4 cut(s)	272, 547, 721, 874
BstKTI	GATC	4 cut(s)	10, 748, 1426, 1430
BstMAI	GTCTC	2 cut(s)	263, 501
BstMBI	GATC	4 cut(s)	7, 745, 1423, 1427
BstMWI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
BstNI	CCWGG	3 cut(s)	255, 696, 1212
BstSCI	CCNGG	3 cut(s)	253, 694, 1210
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
Bsu15I	ATCGAT	1 cut(s)	1426
Bsu36I	CCTNAGG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1211
BsuRI	GGCC	2 cut(s)	87, 488
BsuTUI	ATCGAT	1 cut(s)	1426
BtgI	CCRYGG	2 cut(s)	483, 1100
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	272, 547, 721, 874
BveI	ACCTGC	3 cut(s)	320, 804, 1075
Cac8I	GCNNGC	5 cut(s)	250, 292, 637, 1243, 1247
Cfr13I	GGNCC	3 cut(s)	359, 647, 1207
ClaI	ATCGAT	1 cut(s)	1426
CseI	GACGC	2 cut(s)	628, 1238
Csp6I	GTAC	3 cut(s)	108, 434, 996
CviAII	CATG	3 cut(s)	484, 593, 1168
CviQI	GTAC	3 cut(s)	108, 434, 996
DdeI	CTNAG	4 cut(s)	42, 260, 864, 1074
DpnI	GATC	4 cut(s)	9, 747, 1425, 1429
DpnII	GATC	4 cut(s)	7, 745, 1423, 1427
DraIII	CACNNNGTG	1 cut(s)	1106
EaeI	YGGCCR	2 cut(s)	85, 486
Eco130I	CCWWGG	3 cut(s)	143, 483, 1348
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	956
Eco47I	GGWCC	3 cut(s)	359, 647, 1207
Eco81I	CCTNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	726
EcoRII	CCWGG	3 cut(s)	253, 694, 1210
EcoRV	GATATC	1 cut(s)	956
EcoT14I	CCWWGG	3 cut(s)	143, 483, 1348
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	3 cut(s)	143, 483, 1348
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	3 cut(s)	487, 596, 1171
FatI	CATG	3 cut(s)	483, 592, 1167
FauI	CCCGC	2 cut(s)	250, 1238
FauNDI	CATATG	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	76
FokI	GGATG	4 cut(s)	259, 554, 728, 881
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	2 cut(s)	399, 636
HaeIII	GGCC	2 cut(s)	87, 488
HapII	CCGG	2 cut(s)	431, 857
HgaI	GACGC	2 cut(s)	628, 1238
Hin1I	GRCGYC	1 cut(s)	1249
Hin1II	CATG	3 cut(s)	487, 596, 1171
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	38, 569, 1455
HpaII	CCGG	2 cut(s)	431, 857
HphI	GGTGA	3 cut(s)	261, 1118, 1455
Hpy166II	GTNNAC	3 cut(s)	48, 77, 108
Hpy188I	TCNGA	8 cut(s)	12, 136, 393, 415, 475, 574, 732, 1432
Hpy188III	TCNNGA	3 cut(s)	665, 829, 857
Hpy8I	GTNNAC	3 cut(s)	48, 77, 108
Hpy99I	CGWCG	2 cut(s)	911, 1254
HpyAV	CCTTC	7 cut(s)	57, 147, 697, 1021, 1043, 1106, 1219
HpyCH4IV	ACGT	2 cut(s)	1221, 1403
HpyCH4V	TGCA	9 cut(s)	113, 309, 614, 661, 799, 941, 1084, 1411, 1446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
HpyF3I	CTNAG	4 cut(s)	42, 260, 864, 1074
HpySE526I	ACGT	2 cut(s)	1221, 1403
Hsp92I	GRCGYC	1 cut(s)	1249
Hsp92II	CATG	3 cut(s)	487, 596, 1171
Kpn2I	TCCGGA	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	7, 745, 1423, 1427
LmnI	GCTCC	5 cut(s)	205, 855, 859, 1018, 1355
Lsp1109I	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
LweI	GCATC	3 cut(s)	76, 140, 670
MaeI	CTAG	2 cut(s)	399, 636
MaeII	ACGT	2 cut(s)	1221, 1403
MaeIII	GTNAC	4 cut(s)	35, 277, 448, 616
MalI	GATC	4 cut(s)	9, 747, 1425, 1429
MboI	GATC	4 cut(s)	7, 745, 1423, 1427
MboII	GAAGA	7 cut(s)	170, 402, 755, 884, 887, 957, 1048
MfeI	CAATTG	1 cut(s)	1011
MhlI	GDGCHC	2 cut(s)	398, 1023
MluCI	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
MlyI	GAGTC	2 cut(s)	32, 1449
MmeI	TCCRAC	2 cut(s)	130, 1113
MroI	TCCGGA	1 cut(s)	856
MseI	TTAA	3 cut(s)	57, 1230, 1343
MslI	CAYNNNNRTG	2 cut(s)	597, 666
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	431, 857
MspR9I	CCNGG	3 cut(s)	255, 696, 1212
MunI	CAATTG	1 cut(s)	1011
MvaI	CCWGG	3 cut(s)	255, 696, 1212
MwoI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	4 cut(s)	7, 745, 1423, 1427
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	3 cut(s)	487, 596, 1171
NlaIV	GGNNCC	4 cut(s)	649, 851, 861, 1209
NmeAIII	GCCGAG	2 cut(s)	113, 514
NmuCI	GTSAC	4 cut(s)	35, 277, 448, 616
PaqCI	CACCTGC	1 cut(s)	320
PasI	CCCWGGG	1 cut(s)	1211
PfeI	GAWTC	1 cut(s)	569
Pfl23II	CGTACG	1 cut(s)	995
PflMI	CCANNNNNTGG	1 cut(s)	149
PleI	GAGTC	2 cut(s)	32, 1449
PpsI	GAGTC	2 cut(s)	32, 1449
Ppu21I	YACGTR	1 cut(s)	1222
Psp6I	CCWGG	3 cut(s)	253, 694, 1210
PspGI	CCWGG	3 cut(s)	253, 694, 1210
PspLI	CGTACG	1 cut(s)	995
PspN4I	GGNNCC	4 cut(s)	649, 851, 861, 1209
PspPI	GGNCC	3 cut(s)	359, 647, 1207
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	3 cut(s)	109, 435, 997
RsaNI	GTAC	3 cut(s)	108, 434, 996
RseI	CAYNNNNRTG	2 cut(s)	597, 666
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	57, 1230, 1343
Sau3AI	GATC	4 cut(s)	7, 745, 1423, 1427
Sau96I	GGNCC	3 cut(s)	359, 647, 1207
SchI	GAGTC	2 cut(s)	32, 1449
ScrFI	CCNGG	3 cut(s)	255, 696, 1212
SduI	GDGCHC	2 cut(s)	398, 1023
SfaNI	GCATC	3 cut(s)	76, 140, 670
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	3 cut(s)	359, 647, 1207
SmiMI	CAYNNNNRTG	2 cut(s)	597, 666
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
Sse9I	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
SsiI	CCGC	4 cut(s)	128, 219, 243, 1245
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	399, 636
StyD4I	CCNGG	3 cut(s)	253, 694, 1210
StyI	CCWWGG	3 cut(s)	143, 483, 1348
TaiI	ACGT	2 cut(s)	1224, 1406
TaqI	TCGA	6 cut(s)	76, 353, 624, 828, 1252, 1426
TasI	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	2 cut(s)	131, 221
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	57, 1230, 1343
Tru9I	TTAA	3 cut(s)	57, 1230, 1343
TseFI	GTSAC	4 cut(s)	35, 277, 448, 616
TseI	GCWGC	8 cut(s)	233, 245, 306, 321, 324, 327, 1163, 1411
Tsp45I	GTSAC	4 cut(s)	35, 277, 448, 616
TspDTI	ATGAA	6 cut(s)	536, 768, 786, 885, 1049, 1125
TspGWI	ACGGA	2 cut(s)	184, 265
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	359, 647, 1207
XapI	RAATTY	3 cut(s)	417, 629, 726
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	2 cut(s)	399, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.