Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005612.1

Orthogroup ID

OG0024616

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3106

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 728 bp

atgggcagaccttctatggagaaaagcgaggacggatttacagttagagccaggctggttgtaaagtttcgagctttacaggaaattcgaggtttttggcacaattggaatttgggagccgcctctgtactattgaattggttgtttagtattgaattgctgcttgttttgagaaccgagccaaccaatgtgtccagggacttttggatgcccgatcacagctgtagggtatgctacgactgtgattcccagttcacagtatttaatcgaaggcatcattgccgcctttgtggccgagttttctgcgctaggtgtactgcaaacactattcctgccccatctgatgagccaagaattggtagggaagacggggagaggattagggtctgtaatttttgcttcaagcaatgggagcaagggatagcagcagttgataatgggccccctgaacctagccctggcctcagtccatcaccatctacaacaagcttggtcagtaccaacacaagctgcacctaccacagtagcagcagcactgttggttctaccccttattcgactggaccttaccagcacgtgccctatagttctggtcttagccccagacaatcttgccaagatgattcagttactggcctgcaagacaatgtaacatctcagaggagcattagttctgacgctgccatggcagagtcgtctcccaaccagtttggcttttgcatggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

242

Amino Acids

26.89

Weight (kDa)

6.3

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024616)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08160 pycom15g19920
rosa_multiflora	Rmu_sc0005612.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	2 cut(s)	120, 283
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	84, 109
AcvI	CACGTG	1 cut(s)	577
AfaI	GTAC	3 cut(s)	129, 316, 499
AfiI	CCNNNNNNNGG	2 cut(s)	356, 458
AgsI	TTSAA	3 cut(s)	136, 155, 403
AjnI	CCWGG	3 cut(s)	50, 194, 457
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	4 cut(s)	74, 222, 489, 510
AluI	AGCT	4 cut(s)	74, 222, 489, 510
Alw26I	GTCTC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	4 cut(s)	292, 440, 460, 634
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	6 cut(s)	160, 425, 510, 528, 531, 680
ApoI	RAATTY	2 cut(s)	84, 109
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	440, 441, 563
AsuHPI	GGTGA	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	444, 582
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BccI	CCATC	3 cut(s)	346, 478, 484
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	3 cut(s)	52, 196, 459
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	2 cut(s)	309, 453
BfmI	CTRYAG	2 cut(s)	223, 583
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
BlsI	GCNGC	8 cut(s)	121, 162, 284, 427, 512, 530, 533, 682
Bme1390I	CCNGG	3 cut(s)	52, 196, 459
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	3 cut(s)	440, 441, 563
BmiI	GGNNCC	3 cut(s)	118, 442, 443
BmrFI	CCNGG	3 cut(s)	52, 196, 459
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	198, 283
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	577
BsaJI	CCNNGG	3 cut(s)	195, 457, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 458
Bse1I	ACTGG	4 cut(s)	250, 565, 637, 706
Bse3DI	GCAATG	2 cut(s)	277, 413
BseBI	CCWGG	3 cut(s)	52, 196, 459
BseDI	CCNNGG	3 cut(s)	195, 457, 684
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	356, 458
BseMI	GCAATG	2 cut(s)	277, 413
BseMII	CTCAG	2 cut(s)	478, 671
BseNI	ACTGG	4 cut(s)	250, 565, 637, 706
BseRI	GAGGAG	1 cut(s)	676
BseSI	GKGCMC	2 cut(s)	444, 582
BseXI	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	4 cut(s)	294, 442, 462, 636
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	356, 458
BsmAI	GTCTC	1 cut(s)	702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	294, 442, 462, 636
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	444, 582
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	2 cut(s)	120, 283
BspANI	GGCC	4 cut(s)	294, 442, 462, 636
BspCNI	CTCAG	2 cut(s)	477, 670
BspLI	GGNNCC	3 cut(s)	118, 442, 443
BsrDI	GCAATG	2 cut(s)	277, 413
BsrI	ACTGG	4 cut(s)	250, 565, 637, 706
BssECI	CCNNGG	3 cut(s)	195, 457, 684
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	3 cut(s)	52, 196, 459
Bst4CI	ACNGT	5 cut(s)	43, 242, 259, 524, 538
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	464, 596, 657
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
BstNI	CCWGG	3 cut(s)	52, 196, 459
BstSCI	CCNGG	3 cut(s)	50, 194, 457
BstSFI	CTRYAG	2 cut(s)	223, 583
BstSLI	GKGCMC	2 cut(s)	444, 582
BstV1I	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	294, 442, 462, 636
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	638
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	440, 441, 563
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	128, 315, 498
CviAII	CATG	2 cut(s)	685, 721
CviQI	GTAC	3 cut(s)	128, 315, 498
DdeI	CTNAG	3 cut(s)	464, 596, 657
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	3 cut(s)	50, 194, 457
EcoT14I	CCWWGG	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	2 cut(s)	688, 724
FaiI	YATR	5 cut(s)	17, 232, 585, 686, 722
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	684, 720
Fnu4HI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
FspBI	CTAG	2 cut(s)	309, 453
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
HaeIII	GGCC	4 cut(s)	294, 442, 462, 636
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	688, 724
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	3 cut(s)	245, 623, 692
HphI	GGTGA	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	255, 315
Hpy188I	TCNGA	3 cut(s)	343, 660, 676
Hpy8I	GTNNAC	2 cut(s)	255, 315
HpyAV	CCTTC	2 cut(s)	21, 264
HpyCH4III	ACNGT	5 cut(s)	43, 242, 259, 524, 538
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	320, 513, 640, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
HpyF3I	CTNAG	3 cut(s)	464, 596, 657
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	2 cut(s)	688, 724
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	116, 412, 663
Lsp1109I	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
LweI	GCATC	2 cut(s)	198, 283
MaeI	CTAG	2 cut(s)	309, 453
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	628, 649
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	444, 582
MluCI	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
MlyI	GAGTC	1 cut(s)	701
MnlI	CCTC	6 cut(s)	22, 83, 133, 369, 473, 654
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	52, 196, 459
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	52, 196, 459
MwoI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	688, 724
NlaIV	GGNNCC	3 cut(s)	118, 442, 443
NmeAIII	GCCGAG	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	245, 623
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	8 cut(s)	121, 162, 284, 427, 512, 530, 533, 682
PleI	GAGTC	1 cut(s)	700
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	700
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	50, 194, 457
PspCI	CACGTG	1 cut(s)	577
PspGI	CCWGG	3 cut(s)	50, 194, 457
PspN4I	GGNNCC	3 cut(s)	118, 442, 443
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	440, 441, 563
PstNI	CAGNNNCTG	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	3 cut(s)	129, 316, 499
RsaNI	GTAC	3 cut(s)	128, 315, 498
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	440, 441, 563
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	52, 196, 459
SduI	GDGCHC	2 cut(s)	444, 582
SfaNI	GCATC	2 cut(s)	198, 283
SfcI	CTRYAG	2 cut(s)	223, 583
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
SsiI	CCGC	2 cut(s)	120, 283
SspMI	CTAG	2 cut(s)	309, 453
StyD4I	CCNGG	3 cut(s)	50, 194, 457
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	5 cut(s)	43, 242, 259, 524, 538
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	4 cut(s)	70, 88, 268, 557
TasI	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
TatI	WGTACW	2 cut(s)	127, 314
TauI	GCSGC	2 cut(s)	122, 285
TfiI	GAWTC	2 cut(s)	245, 623
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	6 cut(s)	160, 425, 510, 528, 531, 680
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	2 cut(s)	84, 109
XspI	CTAG	2 cut(s)	309, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.