Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024616

Physical Location & Seq

Genomic Coordinates Forward (+)

14266808 .. 14269005

Gene Structure 2198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCCCGATCAGAGCTGTAGGGTATGTTATGCCTGTGACTCTCAGTTCACAATATTTAACCGAAGGCATCATTGTCGACTTTGTGGCCGAGTTTTCTGTGCCAAGTGTACTGCAAACTCTATTCCTGCGGCATCTGATGAGCCAAGGGTTGGAAGGGAAGATTGGGAACGGATTAGGGTCTGTAATTATTGCTTCCAGCAATGGGAGCAAGGGGTAGCCGCACCCAATAATGCTGCCACCCCCGCAGCCAGCCCTGGTCTCAGTCCATCACCATCCGTGACAAGTTTGGCAAGCACCAAGTCCAGCTGCACCTGCCACAGCAGCAGCAGCACTATTGGTTCTACCCCTTATTCGACTGGACCTTACCAGCGTGTGCCATATAGTTCTGGTCAGAGCCCTAGTCAATCATCTTCCGAAATTTATTCAGTTCCGGTACAGCCAGACATTGTGACATCGCAGACGAGCATTAGTTCTGATGTAGCCATGGCCGAGCCGTCTCCAAATCTATATGGCTTTTGTATGAACAGGAGTGATGACGAGGATGATGACTATGGAGTTTATCGTTTAGATTCAGAACCAAGTCATTTCTCTCATGGCAATGACTATTATGGTGCAGTCACTATCGAGGAATTTGCTAGCGTCTATGGACCCCAGAATGTGCATCTTGATGGAGATAACACGAGTTCCTTCTTACCTGGGAGTTTTGATACACAGGATGTAGTGGGAATTCAGAAAATTGAGGAAGATCAATATGAACACGATAACGATGATGAATGTGGAACTTCTCCATATGACCTGCAAAGCACGAATACCGAACCTGTGGATTTCGAGAACAATGGGCTACTTTGGCTCCCTCCGGAGCCTGAGGATGAAGAAGATGAGAGAGAAGCTGTCTTATTTGATGACGACGATTATGATGGTGGTAGTTCTGGTGGTGGTGCAGGGGAGTGGGGATATCTGGGTTCTTCAAATGGCTTTGGTAATGGGGAGTGTCGTACGAGGGAGAAATCAATTGAGGAGCACAGGAAGGCAATGAAGAATGTGGTGGAAGGTCATTTTAGGGCTTTGGTATCTCAGCTTTTGCAGGTTGAAAACCTACCACGGGGTGATGAAGGCAACAATGAGAGTTGGTTGGACATAATTACTTCGTTGTCTTGGGAAGCTGCCATGCTTCTCAAGCCAGATACGAGCAAGGGTGGAGGAATGGACCCTGGGGGATACGTGAAGGTTAAATGTATAGCTTGCGGGCGTCGAATTGATAGTATGGTGGTAAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGGCGAATGACATCACAAAAAGAAAAACCACGCTTTTTAATCCTTGGAGGAGCTTTGGAATATCAGCGTGTTTCAAACCTCTTGTCAAGTTTTGATACGTTGTTGCAGCAGGAAATGGATCGATCTGAAAATGGCAGTTGCAAAGATAGACTCGCATCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

490

Amino Acids

53.67

Weight (kDa)

4.63

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	2 - 69	6e-17	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024616)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08160 pycom15g19920
rosa_multiflora	Rmu_sc0005612.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	3 cut(s)	320, 804, 1075
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	4 cut(s)	128, 219, 243, 1245
AclWI	GGATC	1 cut(s)	1431
AcoI	YGGCCR	2 cut(s)	85, 486
AcsI	RAATTY	3 cut(s)	417, 629, 726
AcyI	GRCGYC	1 cut(s)	1249
AdeI	CACNNNGTG	1 cut(s)	1106
AfaI	GTAC	3 cut(s)	109, 435, 997
AfiI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
AgsI	TTSAA	3 cut(s)	969, 1091, 1380
AjnI	CCWGG	3 cut(s)	253, 694, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	7 cut(s)	15, 306, 890, 1078, 1163, 1241, 1358
AluI	AGCT	7 cut(s)	15, 306, 890, 1078, 1163, 1241, 1358
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	2 cut(s)	263, 501
AlwI	GGATC	1 cut(s)	1431
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	2 cut(s)	85, 486
ApeKI	GCWGC	8 cut(s)	233, 245, 306, 321, 324, 327, 1163, 1411
ApoI	RAATTY	3 cut(s)	417, 629, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
AspS9I	GGNCC	3 cut(s)	359, 647, 1207
AsuHPI	GGTGA	3 cut(s)	261, 1118, 1455
AsuNHI	GCTAGC	1 cut(s)	635
AvaII	GGWCC	3 cut(s)	359, 647, 1207
AxyI	CCTNAGG	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	398
BauI	CACGAG	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	1023
BbvI	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
BccI	CCATC	4 cut(s)	274, 280, 662, 911
BceAI	ACGGC	1 cut(s)	478
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 614, 648
BciT130I	CCWGG	3 cut(s)	255, 696, 1212
BciVI	GTATCC	1 cut(s)	1211
BcoDI	GTCTC	2 cut(s)	263, 501
BfaI	CTAG	2 cut(s)	399, 636
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	3 cut(s)	320, 804, 1075
BfuI	GTATCC	1 cut(s)	1211
Bme1390I	CCNGG	3 cut(s)	255, 696, 1212
Bme18I	GGWCC	3 cut(s)	359, 647, 1207
BmgT120I	GGNCC	3 cut(s)	359, 647, 1207
BmiI	GGNNCC	4 cut(s)	649, 851, 861, 1209
BmrFI	CCNGG	3 cut(s)	255, 696, 1212
BmsI	GCATC	3 cut(s)	76, 140, 670
BmtI	GCTAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	1160
Bsa29I	ATCGAT	1 cut(s)	1426
BsaAI	YACGTR	1 cut(s)	1222
BsaHI	GRCGYC	1 cut(s)	1249
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BsaWI	WCCGGW	2 cut(s)	430, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
Bse1I	ACTGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	3 cut(s)	206, 604, 1038
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	255, 696, 1212
BseCI	ATCGAT	1 cut(s)	1426
BseDI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BseGI	GGATG	4 cut(s)	272, 547, 721, 874
BseLI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
BseMI	GCAATG	3 cut(s)	206, 604, 1038
BseMII	CTCAG	4 cut(s)	56, 274, 855, 1088
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	1031, 1368
BseXI	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
BsgI	GTGCAG	3 cut(s)	292, 633, 960
BshFI	GGCC	2 cut(s)	87, 488
BshVI	ATCGAT	1 cut(s)	1426
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiSI	CCGG	2 cut(s)	431, 857
BsiWI	CGTACG	1 cut(s)	995
BslI	CCNNNNNNNGG	3 cut(s)	149, 202, 1102
BsmAI	GTCTC	2 cut(s)	263, 501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	87, 488
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	398, 1023
Bsp13I	TCCGGA	1 cut(s)	856
Bsp143I	GATC	4 cut(s)	7, 745, 1423, 1427
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	128, 219, 243, 1245
BspANI	GGCC	2 cut(s)	87, 488
BspCNI	CTCAG	4 cut(s)	55, 273, 856, 1087
BspDI	ATCGAT	1 cut(s)	1426
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	4 cut(s)	649, 851, 861, 1209
BspMI	ACCTGC	3 cut(s)	320, 804, 1075
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	1431
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	206, 604, 1038
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	8 cut(s)	143, 253, 483, 695, 1100, 1210, 1211, 1348
BssMI	GATC	4 cut(s)	7, 745, 1423, 1427
BssNI	GRCGYC	1 cut(s)	1249
BssSI	CACGAG	1 cut(s)	679
BssT1I	CCWWGG	3 cut(s)	143, 483, 1348
Bst2BI	CACGAG	1 cut(s)	679
Bst2UI	CCWGG	3 cut(s)	255, 696, 1212
BstACI	GRCGYC	1 cut(s)	1249
BstBAI	YACGTR	1 cut(s)	1222
BstC8I	GCNNGC	5 cut(s)	250, 292, 637, 1243, 1247
BstDEI	CTNAG	4 cut(s)	42, 260, 864, 1074
BstDSI	CCRYGG	2 cut(s)	483, 1100
BstF5I	GGATG	4 cut(s)	272, 547, 721, 874
BstKTI	GATC	4 cut(s)	10, 748, 1426, 1430
BstMAI	GTCTC	2 cut(s)	263, 501
BstMBI	GATC	4 cut(s)	7, 745, 1423, 1427
BstMWI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
BstNI	CCWGG	3 cut(s)	255, 696, 1212
BstSCI	CCNGG	3 cut(s)	253, 694, 1210
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
Bsu15I	ATCGAT	1 cut(s)	1426
Bsu36I	CCTNAGG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1211
BsuRI	GGCC	2 cut(s)	87, 488
BsuTUI	ATCGAT	1 cut(s)	1426
BtgI	CCRYGG	2 cut(s)	483, 1100
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	272, 547, 721, 874
BveI	ACCTGC	3 cut(s)	320, 804, 1075
Cac8I	GCNNGC	5 cut(s)	250, 292, 637, 1243, 1247
Cfr13I	GGNCC	3 cut(s)	359, 647, 1207
ClaI	ATCGAT	1 cut(s)	1426
CseI	GACGC	2 cut(s)	628, 1238
Csp6I	GTAC	3 cut(s)	108, 434, 996
CviAII	CATG	3 cut(s)	484, 593, 1168
CviQI	GTAC	3 cut(s)	108, 434, 996
DdeI	CTNAG	4 cut(s)	42, 260, 864, 1074
DpnI	GATC	4 cut(s)	9, 747, 1425, 1429
DpnII	GATC	4 cut(s)	7, 745, 1423, 1427
DraIII	CACNNNGTG	1 cut(s)	1106
EaeI	YGGCCR	2 cut(s)	85, 486
Eco130I	CCWWGG	3 cut(s)	143, 483, 1348
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	956
Eco47I	GGWCC	3 cut(s)	359, 647, 1207
Eco81I	CCTNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	726
EcoRII	CCWGG	3 cut(s)	253, 694, 1210
EcoRV	GATATC	1 cut(s)	956
EcoT14I	CCWWGG	3 cut(s)	143, 483, 1348
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	3 cut(s)	143, 483, 1348
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	3 cut(s)	487, 596, 1171
FatI	CATG	3 cut(s)	483, 592, 1167
FauI	CCCGC	2 cut(s)	250, 1238
FauNDI	CATATG	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	76
FokI	GGATG	4 cut(s)	259, 554, 728, 881
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	2 cut(s)	399, 636
HaeIII	GGCC	2 cut(s)	87, 488
HapII	CCGG	2 cut(s)	431, 857
HgaI	GACGC	2 cut(s)	628, 1238
Hin1I	GRCGYC	1 cut(s)	1249
Hin1II	CATG	3 cut(s)	487, 596, 1171
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	38, 569, 1455
HpaII	CCGG	2 cut(s)	431, 857
HphI	GGTGA	3 cut(s)	261, 1118, 1455
Hpy166II	GTNNAC	3 cut(s)	48, 77, 108
Hpy188I	TCNGA	8 cut(s)	12, 136, 393, 415, 475, 574, 732, 1432
Hpy188III	TCNNGA	3 cut(s)	665, 829, 857
Hpy8I	GTNNAC	3 cut(s)	48, 77, 108
Hpy99I	CGWCG	2 cut(s)	911, 1254
HpyAV	CCTTC	7 cut(s)	57, 147, 697, 1021, 1043, 1106, 1219
HpyCH4IV	ACGT	2 cut(s)	1221, 1403
HpyCH4V	TGCA	9 cut(s)	113, 309, 614, 661, 799, 941, 1084, 1411, 1446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
HpyF3I	CTNAG	4 cut(s)	42, 260, 864, 1074
HpySE526I	ACGT	2 cut(s)	1221, 1403
Hsp92I	GRCGYC	1 cut(s)	1249
Hsp92II	CATG	3 cut(s)	487, 596, 1171
Kpn2I	TCCGGA	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	7, 745, 1423, 1427
LmnI	GCTCC	5 cut(s)	205, 855, 859, 1018, 1355
Lsp1109I	GCAGC	8 cut(s)	220, 257, 293, 333, 336, 339, 1150, 1423
LweI	GCATC	3 cut(s)	76, 140, 670
MaeI	CTAG	2 cut(s)	399, 636
MaeII	ACGT	2 cut(s)	1221, 1403
MaeIII	GTNAC	4 cut(s)	35, 277, 448, 616
MalI	GATC	4 cut(s)	9, 747, 1425, 1429
MboI	GATC	4 cut(s)	7, 745, 1423, 1427
MboII	GAAGA	7 cut(s)	170, 402, 755, 884, 887, 957, 1048
MfeI	CAATTG	1 cut(s)	1011
MhlI	GDGCHC	2 cut(s)	398, 1023
MluCI	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
MlyI	GAGTC	2 cut(s)	32, 1449
MmeI	TCCRAC	2 cut(s)	130, 1113
MroI	TCCGGA	1 cut(s)	856
MseI	TTAA	3 cut(s)	57, 1230, 1343
MslI	CAYNNNNRTG	2 cut(s)	597, 666
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	431, 857
MspR9I	CCNGG	3 cut(s)	255, 696, 1212
MunI	CAATTG	1 cut(s)	1011
MvaI	CCWGG	3 cut(s)	255, 696, 1212
MwoI	GCNNNNNNNGC	7 cut(s)	205, 242, 312, 321, 327, 847, 1177
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	4 cut(s)	7, 745, 1423, 1427
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	3 cut(s)	487, 596, 1171
NlaIV	GGNNCC	4 cut(s)	649, 851, 861, 1209
NmeAIII	GCCGAG	2 cut(s)	113, 514
NmuCI	GTSAC	4 cut(s)	35, 277, 448, 616
PaqCI	CACCTGC	1 cut(s)	320
PasI	CCCWGGG	1 cut(s)	1211
PfeI	GAWTC	1 cut(s)	569
Pfl23II	CGTACG	1 cut(s)	995
PflMI	CCANNNNNTGG	1 cut(s)	149
PleI	GAGTC	2 cut(s)	32, 1449
PpsI	GAGTC	2 cut(s)	32, 1449
Ppu21I	YACGTR	1 cut(s)	1222
Psp6I	CCWGG	3 cut(s)	253, 694, 1210
PspGI	CCWGG	3 cut(s)	253, 694, 1210
PspLI	CGTACG	1 cut(s)	995
PspN4I	GGNNCC	4 cut(s)	649, 851, 861, 1209
PspPI	GGNCC	3 cut(s)	359, 647, 1207
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	3 cut(s)	109, 435, 997
RsaNI	GTAC	3 cut(s)	108, 434, 996
RseI	CAYNNNNRTG	2 cut(s)	597, 666
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	57, 1230, 1343
Sau3AI	GATC	4 cut(s)	7, 745, 1423, 1427
Sau96I	GGNCC	3 cut(s)	359, 647, 1207
SchI	GAGTC	2 cut(s)	32, 1449
ScrFI	CCNGG	3 cut(s)	255, 696, 1212
SduI	GDGCHC	2 cut(s)	398, 1023
SfaNI	GCATC	3 cut(s)	76, 140, 670
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	3 cut(s)	359, 647, 1207
SmiMI	CAYNNNNRTG	2 cut(s)	597, 666
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
Sse9I	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
SsiI	CCGC	4 cut(s)	128, 219, 243, 1245
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	399, 636
StyD4I	CCNGG	3 cut(s)	253, 694, 1210
StyI	CCWWGG	3 cut(s)	143, 483, 1348
TaiI	ACGT	2 cut(s)	1224, 1406
TaqI	TCGA	6 cut(s)	76, 353, 624, 828, 1252, 1426
TasI	AATT	8 cut(s)	184, 417, 629, 726, 735, 1011, 1140, 1254
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	2 cut(s)	131, 221
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	57, 1230, 1343
Tru9I	TTAA	3 cut(s)	57, 1230, 1343
TseFI	GTSAC	4 cut(s)	35, 277, 448, 616
TseI	GCWGC	8 cut(s)	233, 245, 306, 321, 324, 327, 1163, 1411
Tsp45I	GTSAC	4 cut(s)	35, 277, 448, 616
TspDTI	ATGAA	6 cut(s)	536, 768, 786, 885, 1049, 1125
TspGWI	ACGGA	2 cut(s)	184, 265
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	359, 647, 1207
XapI	RAATTY	3 cut(s)	417, 629, 726
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	2 cut(s)	399, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.