pycom15g20730

zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
14852770 .. 14855052
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGACTAACTCCAACACCAACACCACCACTAACCAGGGCTCCTCCGCAGAGGGACAGCAACCCCTTAACGAAAATGTCAGTTCCAACGTTACTGGGGCTGCTCCTACTGCTCCACCAAGCACTCATGCTCCGACTCCTACTCCTCCTCCTCCTCCTCAAAGCACTGGTCAAGTTAATGCGGGAGGAGGGGATGGCGGGTTCCTAAGGTCCTCTGGAACTCCTCCTGTTCGTACTCATCTTACCCCTGGCCAATTCAATGTTGGAGGAGGGTTTGCTACCGGAGGGTCCTCTGTGACTCCTCCCGGGCCCAACAAAGGATCTCCAGGCCGTGGATCTCCCTCTCCTAGTAGGGGGACATCCACACCAAGAAGGGCCTCACCCTCTGGTGGCCGGAGGACTCCTAGCAGGGGATCAAAATCTCCTCCTAGCGGGAGAGGATCTCCCTCTTCTTTAGGAAGAGGGTCCTCTGCTGCAGCGGGAAACAACTCTCAAATTGGTGGGAGTAGTTTCACTCCCGTCAGGATTGAAATCTCTTTAGGAGGGGGACTTGCTGTAGAGGGGAGCATGGCCGTAGGTGGCCAGCTGGGCAAGCGTAAAGCCGAGGTCAAAGCCCCTGAAGGAATGACCCCGACTTGCCCCGTGTGCAATCGATCGGATTTCAGTTCGTGGAAAGCATTGTTTGGTCATCAGCGTAGCCACCCGGAGCGTCCCTATAGGGGCGCCTTCCCACCCCCAGGACAGCAACAAGGGGAAGCAAGTAATGCTGCAAATGTGCGCGAGGCTAGGGATGTGGAGGAGGACAATGAAGGCCGTGGTGGAATTGACCTAAACATGCCCCCACCGGATGATGATGATGATGATGATGTTACTGATGACAACATGGATGGTGGCGACAGTGGTGGTGGTGCTGAGGGTTGTAGTTTTCTTGGGCAAAAACAGTTGGTAGTTTCCGCCCAAAATATCGTTAAAGCTTTGGAAGAGAGAGTAGAGAGAGAATCCGTTACCGGTGTATGCGTCTTATGA

Protein Analysis

341

Amino Acids

34.34

Weight (kDa)

5.88

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024573)

Species Orthologous Gene IDs
prunus_persica Prupe.7G181100_v2.0.a1
pyrus_communis pycom02g09250 pycom15g20730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 719
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 777
AciI CCGC 6 cut(s) 45, 179, 195, 429, 476, 951
AclI AACGTT 1 cut(s) 87
AclWI GGATC 4 cut(s) 325, 340, 418, 445
AcoI YGGCCR 4 cut(s) 247, 388, 567, 577
AcuI CTGAAG 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 720
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 8 cut(s) 314, 329, 350, 386, 407, 428, 716, 734
AgeI ACCGGT 1 cut(s) 1004
AgsI TTSAA 2 cut(s) 256, 527
AjnI CCWGG 4 cut(s) 33, 244, 322, 733
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 2 cut(s) 583, 971
AluI AGCT 2 cut(s) 583, 971
AlwI GGATC 4 cut(s) 325, 340, 418, 445
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 8 cut(s) 247, 305, 325, 372, 388, 567, 577, 808
ApaI GGGCCC 1 cut(s) 309
ApeKI GCWGC 4 cut(s) 98, 470, 473, 764
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AsiGI ACCGGT 1 cut(s) 1004
AspLEI GCGC 2 cut(s) 722, 777
AspS9I GGNCC 6 cut(s) 207, 285, 305, 306, 372, 462
AsuC2I CCSGG 3 cut(s) 303, 304, 701
AsuHPI GGTGA 1 cut(s) 369
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 3 cut(s) 207, 285, 462
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 2 cut(s) 249, 579
BanI GGYRCC 1 cut(s) 719
BanII GRGCYC 2 cut(s) 41, 309
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 4 cut(s) 85, 457, 485, 751
BccI CCATC 2 cut(s) 185, 878
BceAI ACGGC 3 cut(s) 312, 554, 795
BciT130I CCWGG 4 cut(s) 35, 246, 324, 735
BcnI CCSGG 3 cut(s) 303, 304, 701
BfaI CTAG 4 cut(s) 345, 402, 426, 783
BfmI CTRYAG 3 cut(s) 471, 552, 712
BfoI RGCGCY 1 cut(s) 723
BglI GCCNNNNNGGC 1 cut(s) 585
BisI GCNGC 4 cut(s) 99, 471, 474, 765
BlsI GCNGC 4 cut(s) 100, 472, 475, 766
Bme1390I CCNGG 7 cut(s) 35, 246, 303, 304, 324, 701, 735
Bme18I GGWCC 3 cut(s) 207, 285, 462
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 6 cut(s) 207, 285, 305, 306, 372, 462
BmiI GGNNCC 6 cut(s) 40, 200, 286, 307, 463, 721
BmrFI CCNGG 7 cut(s) 35, 246, 303, 304, 324, 701, 735
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 909
BpuMI CCSGG 3 cut(s) 303, 304, 701
Bsa29I ATCGAT 1 cut(s) 649
BsaBI GATNNNNATC 2 cut(s) 415, 527
BsaHI GRCGYC 1 cut(s) 720
BsaJI CCNNGG 7 cut(s) 34, 244, 302, 328, 600, 733, 811
BsaWI WCCGGW 3 cut(s) 278, 841, 1004
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 112, 124, 130, 142, 154, 160
Bsc4I CCNNNNNNNGG 8 cut(s) 314, 329, 350, 386, 407, 428, 716, 734
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 2 cut(s) 97, 169
Bse21I CCTNAGG 1 cut(s) 203
Bse8I GATNNNNATC 2 cut(s) 415, 527
BseBI CCWGG 4 cut(s) 35, 246, 324, 735
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 7 cut(s) 34, 244, 302, 328, 600, 733, 811
BseGI GGATG 5 cut(s) 196, 356, 793, 850, 889
BseJI GATNNNNATC 2 cut(s) 415, 527
BseLI CCNNNNNNNGG 8 cut(s) 314, 329, 350, 386, 407, 428, 716, 734
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 2 cut(s) 97, 169
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 4 cut(s) 85, 457, 485, 751
BseYI CCCAGC 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 777
Bsh1285I CGRYCG 1 cut(s) 653
BshFI GGCC 8 cut(s) 249, 307, 327, 374, 390, 569, 579, 810
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 1004
BshVI ATCGAT 1 cut(s) 649
BsiEI CGRYCG 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 6 cut(s) 279, 303, 391, 701, 842, 1005
BslFI GGGAC 4 cut(s) 66, 367, 558, 693
BslI CCNNNNNNNGG 8 cut(s) 314, 329, 350, 386, 407, 428, 716, 734
BsmFI GGGAC 4 cut(s) 66, 367, 558, 693
BsnI GGCC 8 cut(s) 249, 307, 327, 374, 390, 569, 579, 810
BsoBI CYCGRG 1 cut(s) 302
Bsp120I GGGCCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 41, 309
Bsp143I GATC 5 cut(s) 317, 332, 410, 437, 650
BspACI CCGC 6 cut(s) 45, 179, 195, 429, 476, 951
BspANI GGCC 8 cut(s) 249, 307, 327, 374, 390, 569, 579, 810
BspCNI CTCAG 1 cut(s) 901
BspDI ATCGAT 1 cut(s) 649
BspFNI CGCG 1 cut(s) 777
BspLI GGNNCC 6 cut(s) 40, 200, 286, 307, 463, 721
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 4 cut(s) 325, 340, 418, 445
BspT107I GGYRCC 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 1004
BsrI ACTGG 2 cut(s) 97, 169
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 7 cut(s) 34, 244, 302, 328, 600, 733, 811
BssMI GATC 5 cut(s) 317, 332, 410, 437, 650
BssNI GRCGYC 1 cut(s) 720
Bst2UI CCWGG 4 cut(s) 35, 246, 324, 735
Bst4CI ACNGT 2 cut(s) 896, 939
Bst6I CTCTTC 3 cut(s) 451, 451, 972
BstACI GRCGYC 1 cut(s) 720
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 581, 590
BstDEI CTNAG 2 cut(s) 203, 909
BstDSI CCRYGG 2 cut(s) 328, 811
BstF5I GGATG 5 cut(s) 196, 356, 793, 850, 889
BstFNI CGCG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 2 cut(s) 722, 777
BstKTI GATC 5 cut(s) 320, 335, 413, 440, 653
BstMBI GATC 5 cut(s) 317, 332, 410, 437, 650
BstMCI CGRYCG 1 cut(s) 653
BstMWI GCNNNNNNNGC 5 cut(s) 107, 585, 589, 642, 761
BstNI CCWGG 4 cut(s) 35, 246, 324, 735
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 7 cut(s) 33, 244, 301, 302, 322, 699, 733
BstSFI CTRYAG 3 cut(s) 471, 552, 712
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 4 cut(s) 85, 457, 485, 751
BstX2I RGATCY 3 cut(s) 317, 332, 437
BstYI RGATCY 3 cut(s) 317, 332, 437
Bsu15I ATCGAT 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 8 cut(s) 249, 307, 327, 374, 390, 569, 579, 810
BsuTUI ATCGAT 1 cut(s) 649
BtgI CCRYGG 2 cut(s) 328, 811
BtsCI GGATG 5 cut(s) 196, 356, 793, 850, 889
BtsIMutI CAGTG 2 cut(s) 162, 901
Cac8I GCNNGC 2 cut(s) 581, 590
CfoI GCGC 2 cut(s) 722, 777
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 6 cut(s) 207, 285, 305, 306, 372, 462
Cfr9I CCCGGG 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 649
CseI GACGC 2 cut(s) 695, 1003
Csp6I GTAC 1 cut(s) 231
CspAI ACCGGT 1 cut(s) 1004
CviAII CATG 4 cut(s) 125, 565, 832, 880
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 203, 909
DinI GGCGCC 1 cut(s) 721
DpnI GATC 5 cut(s) 319, 334, 412, 439, 652
DpnII GATC 5 cut(s) 317, 332, 410, 437, 650
EaeI YGGCCR 4 cut(s) 247, 388, 567, 577
Eam1104I CTCTTC 3 cut(s) 451, 451, 972
EarI CTCTTC 3 cut(s) 451, 451, 972
EciI GGCGGA 1 cut(s) 940
Eco24I GRGCYC 2 cut(s) 41, 309
Eco47I GGWCC 3 cut(s) 207, 285, 462
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 302
EcoO109I RGGNCCY 4 cut(s) 207, 285, 372, 462
EcoRII CCWGG 4 cut(s) 33, 244, 322, 733
EcoT38I GRGCYC 2 cut(s) 41, 309
EgeI GGCGCC 1 cut(s) 721
EheI GGCGCC 1 cut(s) 721
FaeI CATG 4 cut(s) 128, 568, 835, 883
FaiI YATR 7 cut(s) 126, 566, 714, 833, 881, 1012, 1021
FaqI GGGAC 4 cut(s) 66, 367, 558, 693
FatI CATG 4 cut(s) 124, 564, 831, 879
FauI CCCGC 4 cut(s) 172, 188, 422, 469
Fnu4HI GCNGC 4 cut(s) 99, 471, 474, 765
FokI GGATG 5 cut(s) 203, 343, 800, 857, 896
FriOI GRGCYC 2 cut(s) 41, 309
Fsp4HI GCNGC 4 cut(s) 99, 471, 474, 765
FspBI CTAG 4 cut(s) 345, 402, 426, 783
GlaI GCGC 2 cut(s) 721, 776
GluI GCNGC 4 cut(s) 99, 471, 474, 765
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 8 cut(s) 249, 307, 327, 374, 390, 569, 579, 810
HapII CCGG 6 cut(s) 279, 303, 391, 701, 842, 1005
HgaI GACGC 2 cut(s) 695, 1003
HhaI GCGC 2 cut(s) 722, 777
Hin1I GRCGYC 1 cut(s) 720
Hin1II CATG 4 cut(s) 128, 568, 835, 883
Hin6I GCGC 2 cut(s) 720, 775
HinP1I GCGC 2 cut(s) 720, 775
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 4 cut(s) 133, 295, 397, 995
HpaII CCGG 6 cut(s) 279, 303, 391, 701, 842, 1005
HphI GGTGA 1 cut(s) 369
Hpy188I TCNGA 2 cut(s) 132, 655
Hpy188III TCNNGA 2 cut(s) 213, 520
HpyAV CCTTC 4 cut(s) 363, 611, 733, 800
HpyCH4III ACNGT 2 cut(s) 896, 939
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 473, 645, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 585, 589, 642, 761
HpyF3I CTNAG 2 cut(s) 203, 909
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 720
Hsp92II CATG 4 cut(s) 128, 568, 835, 883
HspAI GCGC 2 cut(s) 720, 775
KasI GGCGCC 1 cut(s) 719
Kzo9I GATC 5 cut(s) 317, 332, 410, 437, 650
LmnI GCTCC 6 cut(s) 44, 106, 115, 133, 561, 703
Lsp1109I GCAGC 4 cut(s) 85, 457, 485, 751
MaeI CTAG 4 cut(s) 345, 402, 426, 783
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 4 cut(s) 88, 292, 865, 1000
MalI GATC 5 cut(s) 319, 334, 412, 439, 652
MboI GATC 5 cut(s) 317, 332, 410, 437, 650
MboII GAAGA 3 cut(s) 438, 468, 989
MflI RGATCY 3 cut(s) 317, 332, 437
MhlI GDGCHC 2 cut(s) 41, 309
MlsI TGGCCA 2 cut(s) 249, 579
MluCI AATT 3 cut(s) 251, 492, 819
MluNI TGGCCA 2 cut(s) 249, 579
Mly113I GGCGCC 1 cut(s) 720
MlyI GAGTC 3 cut(s) 127, 289, 391
MmeI TCCRAC 4 cut(s) 36, 108, 155, 241
Mox20I TGGCCA 2 cut(s) 249, 579
MscI TGGCCA 2 cut(s) 249, 579
MseI TTAA 3 cut(s) 66, 174, 966
Msp20I TGGCCA 2 cut(s) 249, 579
MspA1I CMGCKG 2 cut(s) 476, 583
MspI CCGG 6 cut(s) 279, 303, 391, 701, 842, 1005
MspR9I CCNGG 7 cut(s) 35, 246, 303, 304, 324, 701, 735
MvaI CCWGG 4 cut(s) 35, 246, 324, 735
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 107, 585, 589, 642, 761
NarI GGCGCC 1 cut(s) 720
NciI CCSGG 3 cut(s) 303, 304, 701
NdeII GATC 5 cut(s) 317, 332, 410, 437, 650
NlaIII CATG 4 cut(s) 128, 568, 835, 883
NlaIV GGNNCC 6 cut(s) 40, 200, 286, 307, 463, 721
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 835
PfeI GAWTC 1 cut(s) 995
PflMI CCANNNNNTGG 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 1004
PkrI GCNGC 4 cut(s) 100, 472, 475, 766
Ple19I CGATCG 1 cut(s) 653
PleI GAGTC 3 cut(s) 127, 289, 391
PluTI GGCGCC 1 cut(s) 723
PpsI GAGTC 3 cut(s) 127, 289, 391
PpuMI RGGWCCY 3 cut(s) 207, 285, 462
Psp1406I AACGTT 1 cut(s) 87
Psp5II RGGWCCY 3 cut(s) 207, 285, 462
Psp6I CCWGG 4 cut(s) 33, 244, 322, 733
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 4 cut(s) 33, 244, 322, 733
PspN4I GGNNCC 6 cut(s) 40, 200, 286, 307, 463, 721
PspOMI GGGCCC 1 cut(s) 305
PspPI GGNCC 6 cut(s) 207, 285, 305, 306, 372, 462
PspPPI RGGWCCY 3 cut(s) 207, 285, 462
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 3 cut(s) 317, 332, 437
PvuI CGATCG 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 66, 174, 966
SatI GCNGC 4 cut(s) 99, 471, 474, 765
Sau3AI GATC 5 cut(s) 317, 332, 410, 437, 650
Sau96I GGNCC 6 cut(s) 207, 285, 305, 306, 372, 462
SchI GAGTC 3 cut(s) 127, 289, 391
ScrFI CCNGG 7 cut(s) 35, 246, 303, 304, 324, 701, 735
SduI GDGCHC 2 cut(s) 41, 309
SetI ASST 7 cut(s) 90, 209, 577, 585, 606, 828, 973
SfcI CTRYAG 3 cut(s) 471, 552, 712
SfoI GGCGCC 1 cut(s) 721
SinI GGWCC 3 cut(s) 207, 285, 462
SmaI CCCGGG 1 cut(s) 304
Sse9I AATT 3 cut(s) 251, 492, 819
SsiI CCGC 6 cut(s) 45, 179, 195, 429, 476, 951
SspDI GGCGCC 1 cut(s) 719
SspMI CTAG 4 cut(s) 345, 402, 426, 783
StyD4I CCNGG 7 cut(s) 33, 244, 301, 302, 322, 699, 733
TaaI ACNGT 2 cut(s) 896, 939
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 649
TasI AATT 3 cut(s) 251, 492, 819
TfiI GAWTC 1 cut(s) 995
Tru1I TTAA 3 cut(s) 66, 174, 966
Tru9I TTAA 3 cut(s) 66, 174, 966
TscAI CASTG 2 cut(s) 169, 901
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 98, 470, 473, 764
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 1 cut(s) 988
TspMI CCCGGG 1 cut(s) 302
TspRI CASTG 2 cut(s) 169, 901
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 3 cut(s) 207, 285, 462
XceI RCATGY 1 cut(s) 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 302
XspI CTAG 4 cut(s) 345, 402, 426, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.