Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029463

Physical Location & Seq

Genomic Coordinates Forward (+)

16130528 .. 16136640

Gene Structure 6113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAGCAGTGAGAGAAGTGGAGGAAACTTTGTCTGAGCTGAGGCAAACATTCAAAAGTGGAAGAACCAGAAGCGTTGCATGGAGGAAAAAACAACTCAGTGCACTTCTGGAGCTCGTGAATGGCAACGAAGAGAAGATTTTCAAAGCTCTCGATCAAGATCTTGGCAAGCACCCAGTTGAATCTTATCGGGATGAAGTTGGAGTTGTGAAAAAATCACTCAACCATACTTTGAGCAATTTGGAGAAATGGGCTGCTCCTAAAAGGGCACGATTTGCCGTTGCTTTTGTTTCCAACGAGCGGGGAGGTGCTGCCGGAACCCCTCGGCGTAGTTCTCATATTTGCATCTTGGAACTTCCCAATATCCTTGGCTTTGGACCCTGTGATCGGAGCAATAGCTGCAGGGAACGCAGTGGTTCTAAAACCTTCAGAGCAAGCGCCGGCGTGCTCTTCTTTTCTTGCCAAGACCGTCCCTCAATACTTGGACGGCAAAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

167

Amino Acids

18.49

Weight (kDa)

9.77

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029463)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22060
rosa_multiflora	Rmu_co8420053.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	300, 387
AgsI	TTSAA	3 cut(s)	55, 145, 182
AluBI	AGCT	4 cut(s)	40, 115, 149, 399
AluI	AGCT	4 cut(s)	40, 115, 149, 399
Alw21I	GWGCWC	3 cut(s)	106, 117, 450
Alw44I	GTGCAC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	254, 311, 399
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	2 cut(s)	106, 271
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	3 cut(s)	106, 117, 450
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	241, 298, 386
BceAI	ACGGC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	400
BfoI	RGCGCY	1 cut(s)	441
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	3 cut(s)	255, 312, 400
BlsI	GCNGC	3 cut(s)	256, 313, 401
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	319, 379
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	323, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 387
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	323, 367
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	300, 387
BseMII	CTCAG	3 cut(s)	27, 32, 112
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	106, 271
BseXI	GCAGC	3 cut(s)	241, 298, 386
BsiHKAI	GWGCWC	3 cut(s)	106, 117, 450
BsiSI	CCGG	2 cut(s)	315, 441
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	300, 387
BsmFI	GGGAC	1 cut(s)	456
Bsp1286I	GDGCHC	4 cut(s)	106, 117, 271, 450
Bsp143I	GATC	3 cut(s)	154, 160, 385
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	3 cut(s)	28, 33, 111
BspLI	GGNNCC	2 cut(s)	319, 379
BspMAI	CTGCAG	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	323, 367
BssMI	GATC	3 cut(s)	154, 160, 385
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	2 cut(s)	126, 455
BstAPI	GCANNNNNTGC	2 cut(s)	275, 399
BstC8I	GCNNGC	4 cut(s)	170, 436, 442, 446
BstDEI	CTNAG	3 cut(s)	36, 41, 98
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	3 cut(s)	157, 163, 388
BstMBI	GATC	3 cut(s)	154, 160, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 399, 408
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	2 cut(s)	106, 271
BstV1I	GCAGC	3 cut(s)	241, 298, 386
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	2 cut(s)	15, 418
BtsIMutI	CAGTG	3 cut(s)	15, 106, 418
Cac8I	GCNNGC	4 cut(s)	170, 436, 442, 446
CfoI	GCGC	1 cut(s)	440
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	6 cut(s)	40, 115, 149, 254, 372, 399
CviKI_1	RGCY	6 cut(s)	40, 115, 149, 254, 372, 399
DdeI	CTNAG	3 cut(s)	36, 41, 98
DpnI	GATC	3 cut(s)	156, 162, 387
DpnII	GATC	3 cut(s)	154, 160, 385
Eam1104I	CTCTTC	2 cut(s)	126, 455
EarI	CTCTTC	2 cut(s)	126, 455
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	1 cut(s)	84
FaiI	YATR	3 cut(s)	82, 228, 339
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	80
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	255, 312, 400
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	255, 312, 400
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	3 cut(s)	255, 312, 400
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	441
HapII	CCGG	2 cut(s)	315, 441
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	315, 441
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	37, 390, 431
Hpy188III	TCNNGA	5 cut(s)	110, 118, 152, 158, 191
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	80, 104, 345, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 399, 408
HpyF3I	CTNAG	3 cut(s)	36, 41, 98
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	438
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	154, 160, 385
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	3 cut(s)	112, 262, 390
LpnPI	CCDG	7 cut(s)	82, 95, 189, 328, 388, 394, 454
Lsp1109I	GCAGC	3 cut(s)	241, 298, 386
LweI	GCATC	1 cut(s)	354
MalI	GATC	3 cut(s)	156, 162, 387
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	3 cut(s)	154, 160, 385
MboII	GAAGA	4 cut(s)	75, 143, 148, 442
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	4 cut(s)	106, 117, 271, 450
MluCI	AATT	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	181, 318
MnlI	CCTC	6 cut(s)	16, 36, 78, 299, 333, 484
MreI	CGCCGGCG	1 cut(s)	440
MroNI	GCCGGC	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	499
MspI	CCGG	2 cut(s)	315, 441
MwoI	GCNNNNNNNGC	3 cut(s)	275, 399, 408
NaeI	GCCGGC	1 cut(s)	442
NdeII	GATC	3 cut(s)	154, 160, 385
NgoMIV	GCCGGC	1 cut(s)	440
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	2 cut(s)	319, 379
NmeAIII	GCCGAG	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	455
PdiI	GCCGGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	256, 313, 401
Psp124BI	GAGCTC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	319, 379
PspPI	GGNCC	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	3 cut(s)	255, 312, 400
Sau3AI	GATC	3 cut(s)	154, 160, 385
Sau96I	GGNCC	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	106, 117, 271, 450
SetI	ASST	6 cut(s)	42, 117, 151, 310, 401, 428
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	400
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	301
SstI	GAGCTC	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	3 cut(s)	15, 106, 418
TseI	GCWGC	3 cut(s)	254, 311, 399
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	3 cut(s)	15, 106, 418
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.