Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420053.1

Orthogroup ID

OG0029463

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 189

Gene Structure 188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 188 bp

atgacagaaatagtagaagaaacactgtgtgagctgaggcaaaccttcaagagtggtaaaaccaaaagtgttgcatggaggaaaacccaactcaatgctcttcgtcagctcgtcaaagataatgaggaaaaggtctttgaagcactctatcaagatcttggcaagcacccgattgaatcttacaggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

62

Amino Acids

7.33

Weight (kDa)

7.87

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029463)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g22060
rosa_multiflora	Rmu_co8420053.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	49, 140, 176
AluBI	AGCT	2 cut(s)	34, 109
AluI	AGCT	2 cut(s)	34, 109
BbvCI	CCTCAGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	105
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	164
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	2 cut(s)	34, 109
CviKI_1	RGCY	2 cut(s)	34, 109
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
FaeI	CATG	1 cut(s)	78
FaiI	YATR	1 cut(s)	76
FatI	CATG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	49, 152
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	1 cut(s)	169
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	29, 92
MflI	RGATCY	1 cut(s)	154
MnlI	CCTC	3 cut(s)	30, 72, 118
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	154
SetI	ASST	4 cut(s)	36, 47, 111, 135
SgeI	CNNG	7 cut(s)	61, 87, 122, 164, 170, 175, 181
TaaI	ACNGT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.