Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029465

Physical Location & Seq

Genomic Coordinates Forward (+)

24645838 .. 24646119

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCACGACATTGAAGTTGTGCAACGGATTGTGGAATATTTCTTGATGCATGAGCAGCAAGAACAGCAACAGAAGACTGGTAAAATTGCTGTTAGTAAGCTGTTAGACAACTACCTATCAGAGATTGCAGGAGACCCAAAACTCTCCATAACCAAGTTTCATGTAATGGCGGAATTACTGCCAGAAAATGCTCGAACATGTGATGATGGACTTTACAGAGCCATTGATACCTATCTAAAGGTTACCTTCTCACCTGTTTCTCTAGTTTTACCTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

5.21

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	1 - 81	9.8e-29	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029465)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g28580
rosa_samantha	Rh1DG446400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	280
AciI	CCGC	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	82
BstEII	GGTNACC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 64
BstNSI	RCATGY	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	50, 161, 198
CviJI	RGCY	2 cut(s)	100, 221
CviKI_1	RGCY	2 cut(s)	100, 221
EciI	GGCGGA	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	51
FaeI	CATG	3 cut(s)	53, 164, 201
FaiI	YATR	5 cut(s)	51, 149, 162, 199, 280
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	3 cut(s)	49, 160, 197
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	53, 164, 201
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	4, 22, 49, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 64
Hsp92II	CATG	3 cut(s)	53, 164, 201
LpnPI	CCDG	4 cut(s)	63, 114, 195, 267
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	2 cut(s)	84, 173
Mph1103I	ATGCAT	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	55, 64
NlaIII	CATG	3 cut(s)	53, 164, 201
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	201
PciI	ACATGT	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	57
PscI	ACATGT	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	241
SatI	GCNGC	1 cut(s)	56
SetI	ASST	7 cut(s)	102, 117, 233, 243, 248, 256, 274
SfaNI	GCATC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	84, 173
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	263
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	84, 173
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.