Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0029465

Physical Location & Seq

Genomic Coordinates Reverse (-)

65500841 .. 65518541

Gene Structure 17701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG446400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTATTCACAAAGAATATGGTCTCCAGAAGAACGCACGATGCACGACATTGATGTTGTTCAAAGGATTGTGGAATATTTCTTGATGCTTGAGCATCAACAGCAAGAGAGGACTGGTAAAACCAATATCAGTAAGCTCTTGGACAGCTACCTGGCTGAGATTGCAGGAGACCCAAACGCTTTCCTTATTGCTTTTCGATCACTTGCTGTGGATACATCATGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

75

Amino Acids

8.73

Weight (kDa)

4.92

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	10 - 69	3.7e-12	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0029465)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g28580
rosa_samantha	Rh1DG446400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	136, 147
AluI	AGCT	2 cut(s)	136, 147
Alw26I	GTCTC	2 cut(s)	27, 162
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	27, 162
BfuI	GTATCC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	3 cut(s)	30, 75, 103
BpmI	CTGGAG	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	27, 162
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	27, 162
Bso31I	GGTCTC	2 cut(s)	27, 162
Bsp143I	GATC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	27, 162
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	27, 162
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 161
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	205
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	3 cut(s)	136, 147, 155
CviKI_1	RGCY	3 cut(s)	136, 147, 155
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco31I	GGTCTC	2 cut(s)	27, 162
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	222
FaiI	YATR	2 cut(s)	19, 220
FatI	CATG	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	26, 82
HpyCH4V	TGCA	2 cut(s)	43, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 161
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	39, 99, 137, 150, 164
LweI	GCATC	3 cut(s)	30, 75, 103
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	1 cut(s)	41
MnlI	CCTC	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	100, 161
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	3 cut(s)	138, 149, 153
SfaNI	GCATC	3 cut(s)	30, 75, 103
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SspI	AATATT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.