Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028025

Physical Location & Seq

Genomic Coordinates Forward (+)

33681813 .. 33684725

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34100.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGTGTCCGTATTGGAAGGCCCCCACAAGTTGATATATCAGCTCTAAGAGAGAACTATATTTCTCCTGAGTTTCTTGAGGAACAGGTGGAGGCTGACCCCTTTGATCAGTTCCGCAAATGGTTCGACGATGTAGTGGCTGCTGGATTGAGGGAACCAAATGCTATGGCATTGTCAACGGCTACCAAGAATGGAAAAATCTCATCCCGAATGGTATTGCTCAAAGGATTTGATAAGAACGGTTTTGTCTGGTACACAAACTATGAAAGTCGAAAGGCACATGAATTGTCTGAAAATCCTCGTGCATCTCTTCTTTTCTACTGGGATGGCCTGAATCGGCAGGTGAGAGTGGAAGGGTCTGTGCAGAAAGTTTCTGATGAGGAATCTGATCGATACTTCCATAGCCGTCCTCGAGGCAGTCAGATTGGAGCAATAGTTAGCGAGCAGAGCACTGTTGTTCCCGGAAGGCATGTTCTGTATGACCAATACAAAGAACTAGAAGAAAAATTCTCTGATGGAAGTTTAATTCCAAAACCTAAAAACTGGGGAGGATACAGACTTAAGCCAGAGCTGTTTGAGTTTTGGCAAGGCCAAAAATCTCGTTTGCATGACAGGCTGCGATATTCTCCTGAAGAGATCAATGGACAACAAGTGTGGAAAATTGAGCGGTTGGCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006081 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0016853 GO:0016854 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0031974 GO:0031981 GO:0034356 GO:0034641 GO:0034654 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0052856 GO:0052857 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

PNP_phzG_C Putative_PNPOx YjeF_N

Protein Analysis

227

Amino Acids

26.29

Weight (kDa)

6.93

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028025)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35940
pyrus_communis	pycom15g34100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
AbsI	CCTCGAGG	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	673
AccBSI	CCGCTC	1 cut(s)	667
AciI	CCGC	2 cut(s)	115, 667
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	1 cut(s)	254
AflII	CTTAAG	1 cut(s)	560
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	2 cut(s)	44, 571
AluI	AGCT	2 cut(s)	44, 571
Alw21I	GWGCWC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	3 cut(s)	20, 328, 589
ApeKI	GCWGC	2 cut(s)	140, 616
ApoI	RAATTY	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	127, 603
BccI	CCATC	2 cut(s)	320, 509
BceAI	ACGGC	2 cut(s)	195, 390
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciVI	GTATCC	1 cut(s)	545
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	462
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	677
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	2 cut(s)	141, 617
BlsI	GCNGC	2 cut(s)	142, 618
Bme1390I	CCNGG	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	3 cut(s)	23, 156, 675
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	2 cut(s)	331, 553
BmsI	GCATC	1 cut(s)	314
BmuI	ACTGGG	2 cut(s)	331, 553
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse1I	ACTGG	2 cut(s)	326, 548
BseCI	ATCGAT	1 cut(s)	391
BseGI	GGATG	2 cut(s)	203, 331
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	326, 548
BseXI	GCAGC	2 cut(s)	127, 603
BsgI	GTGCAG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	22, 330, 591
BshNI	GGYRCC	1 cut(s)	673
BshVI	ATCGAT	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	462
BsnI	GGCC	3 cut(s)	22, 330, 591
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	106, 388, 636
BspACI	CCGC	2 cut(s)	115, 667
BspANI	GGCC	3 cut(s)	22, 330, 591
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	23, 156, 675
BspMI	ACCTGC	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	326, 548
BssMI	GATC	3 cut(s)	106, 388, 636
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	242, 454
Bst6I	CTCTTC	2 cut(s)	315, 627
BstACI	GRCGYC	1 cut(s)	674
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	47, 69
BstF5I	GGATG	2 cut(s)	203, 331
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	3 cut(s)	109, 391, 639
BstMBI	GATC	3 cut(s)	106, 388, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	447, 613, 673
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	127, 603
Bsu15I	ATCGAT	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	22, 330, 591
BsuTUI	ATCGAT	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	203, 331
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	4 cut(s)	281, 470, 608, 678
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	47, 69
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	3 cut(s)	108, 390, 638
DpnII	GATC	3 cut(s)	106, 388, 636
Eam1104I	CTCTTC	2 cut(s)	315, 627
EarI	CTCTTC	2 cut(s)	315, 627
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
FaeI	CATG	4 cut(s)	284, 473, 611, 681
FatI	CATG	4 cut(s)	280, 469, 607, 677
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	141, 617
FokI	GGATG	2 cut(s)	190, 338
Fsp4HI	GCNGC	2 cut(s)	141, 617
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	2 cut(s)	141, 617
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	22, 330, 591
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	4 cut(s)	284, 473, 611, 681
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	334, 383
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	177, 255
Hpy188I	TCNGA	5 cut(s)	292, 376, 388, 423, 514
Hpy188III	TCNNGA	4 cut(s)	68, 77, 207, 629
Hpy8I	GTNNAC	2 cut(s)	177, 255
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	12, 347, 459
HpyCH4III	ACNGT	2 cut(s)	242, 454
HpyCH4V	TGCA	3 cut(s)	305, 364, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	447, 613, 673
HpyF3I	CTNAG	2 cut(s)	47, 69
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	4 cut(s)	284, 473, 611, 681
HspAI	GCGC	1 cut(s)	674
KasI	GGCGCC	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 388, 636
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	2 cut(s)	127, 603
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	497
MalI	GATC	3 cut(s)	108, 390, 638
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	3 cut(s)	106, 388, 636
MboII	GAAGA	3 cut(s)	302, 512, 644
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	4 cut(s)	284, 506, 525, 660
Mly113I	GGCGCC	1 cut(s)	674
MnlI	CCTC	8 cut(s)	73, 85, 144, 309, 373, 407, 420, 542
MseI	TTAA	2 cut(s)	524, 561
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	447, 613, 673
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	106, 388, 636
NlaIII	CATG	4 cut(s)	284, 473, 611, 681
NlaIV	GGNNCC	3 cut(s)	23, 156, 675
NspI	RCATGY	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	334, 383
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	142, 618
PluTI	GGCGCC	1 cut(s)	677
PspN4I	GGNNCC	3 cut(s)	23, 156, 675
PspPI	GGNCC	1 cut(s)	21
PspXI	VCTCGAGB	1 cut(s)	411
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	524, 561
SatI	GCNGC	2 cut(s)	141, 617
Sau3AI	GATC	3 cut(s)	106, 388, 636
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	5 cut(s)	46, 90, 345, 538, 573
SfaNI	GCATC	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	3 cut(s)	77, 411, 560
SmoI	CTYRAG	3 cut(s)	77, 411, 560
Sse9I	AATT	4 cut(s)	284, 506, 525, 660
SsiI	CCGC	2 cut(s)	115, 667
SspDI	GGCGCC	1 cut(s)	673
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	242, 454
TaqI	TCGA	4 cut(s)	126, 271, 391, 412
TasI	AATT	4 cut(s)	284, 506, 525, 660
TfiI	GAWTC	2 cut(s)	334, 383
Tru1I	TTAA	2 cut(s)	524, 561
Tru9I	TTAA	2 cut(s)	524, 561
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	2 cut(s)	140, 616
TspDTI	ATGAA	2 cut(s)	279, 297
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.