Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024660

Physical Location & Seq

Genomic Coordinates Forward (+)

34026665 .. 34026874

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCATGTGGCTGGGGATTTAGGGTTTCGGAGCCTCGTGCTGGTGGTTTGTTTTCTGGCGTCGGTGATCGGATTCTTTGTGGTTCGGAGAAAATGGCGCCTCGCTAACGCCAGGAGGGAGGATCGATCAGGAGACTTTTGGTCTTGGCCAAGGAGGAAGTTGCTAGAGCTGAGTTCGAGGTCACGGCTGGGTACGGCGCTGTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

70

Amino Acids

8.07

Weight (kDa)

11.86

Isoelectric Point (pI)

67.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024660)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g16840 pycom15g34360
rosa_multiflora	Rmu_sc0008452.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	59, 97
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	99, 199
AsuHPI	GGTGA	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	2 cut(s)	100, 200
Bme1390I	CCNGG	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	32, 98
BmrFI	CCNGG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	124
BsaHI	GRCGYC	2 cut(s)	59, 97
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	161
BseYI	CCCAGC	2 cut(s)	11, 187
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	66, 121, 125
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	32, 98
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	66, 121, 125
BssNI	GRCGYC	2 cut(s)	59, 97
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	112
BstACI	GRCGYC	2 cut(s)	59, 97
BstDEI	CTNAG	1 cut(s)	170
BstH2I	RGCGCY	2 cut(s)	100, 200
BstHHI	GCGC	2 cut(s)	99, 199
BstKTI	GATC	3 cut(s)	69, 124, 128
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	66, 121, 125
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	124
CfoI	GCGC	2 cut(s)	99, 199
ClaI	ATCGAT	1 cut(s)	124
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	5 cut(s)	11, 33, 148, 169, 187
CviKI_1	RGCY	5 cut(s)	11, 33, 148, 169, 187
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	98
DpnI	GATC	3 cut(s)	68, 123, 127
DpnII	GATC	3 cut(s)	66, 121, 125
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	8
FaiI	YATR	1 cut(s)	6
FatI	CATG	1 cut(s)	4
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	98, 198
GsaI	CCCAGC	2 cut(s)	15, 191
HaeII	RGCGCY	2 cut(s)	100, 200
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	2 cut(s)	99, 199
Hin1I	GRCGYC	2 cut(s)	59, 97
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	2 cut(s)	97, 197
HinP1I	GCGC	2 cut(s)	97, 197
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	30, 71, 87
Hpy188III	TCNNGA	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	2 cut(s)	59, 97
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	2 cut(s)	97, 197
KasI	GGCGCC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	66, 121, 125
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	26, 41, 97, 114, 124, 173
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	3 cut(s)	68, 123, 127
MboI	GATC	3 cut(s)	66, 121, 125
MlsI	TGGCCA	1 cut(s)	148
MluNI	TGGCCA	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	97
MnlI	CCTC	6 cut(s)	44, 108, 110, 112, 147, 171
Mox20I	TGGCCA	1 cut(s)	148
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	148
Msp20I	TGGCCA	1 cut(s)	148
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	97
NdeII	GATC	3 cut(s)	66, 121, 125
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	32, 98
NmuCI	GTSAC	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	2 cut(s)	11, 187
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	32, 98
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	66, 121, 125
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	2 cut(s)	171, 182
SfoI	GGCGCC	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	149
TaqI	TCGA	2 cut(s)	124, 176
TfiI	GAWTC	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.