pycom15g36130

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029471
Physical Location & Seq
Reverse (-)
36210925 .. 36211778
854 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g36130.3

Sequence Viewer

Length: 360 bp
ATGATGAAAACCGTGAAGATTCAAGATGTTGATAATTTGCAAGATGAAATGATGGACCTGATGGATGTGAGCAATGAAATTCAAGAGACCCTTGGCAGAAGCTATAGTGTTCCTGATGACATTGACGAGGAAGATCTTATGGGTGAGCTGGATGCTCTAGAAGCAGACATGGGTATGGAAACAGAAGCTGATGGAGTTCCCTCCTATCTCCAACCTGATGCTGAACCGGACTTGGATTCGGAGCTCCGCTTGCCTTCAGCACCCACAGGACATGCAACAGCTCCAGCTGGGAGATCCAATGCCCAGGCTGAGGACGAATTGGGTTTACCGGCTGTCCCTCGGGCAACACTTCGCGGTTAG

Protein Analysis

120

Amino Acids

12.88

Weight (kDa)

4.05

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029471)

Species Orthologous Gene IDs
pyrus_communis pycom15g36130
rosa_samantha Rh1CG115800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 247, 354
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 2 cut(s) 23, 83
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 6 cut(s) 102, 148, 188, 244, 281, 287
AluI AGCT 6 cut(s) 102, 148, 188, 244, 281, 287
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 339
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 309
BccI CCATC 3 cut(s) 46, 55, 185
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 103
BglII AGATCT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 142, 208
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 91, 303, 338
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 91, 303, 338
BseGI GGATG 2 cut(s) 70, 157
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 227, 329
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 133, 293
BspACI CCGC 2 cut(s) 247, 354
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 354
BspPI GGATC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 91, 303, 338
BssMI GATC 2 cut(s) 133, 293
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 70, 157
BstFNI CGCG 1 cut(s) 354
BstKTI GATC 2 cut(s) 136, 296
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 133, 293
BstMWI GCNNNNNNNGC 2 cut(s) 161, 250
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 103
BstUI CGCG 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 133, 293
BstYI RGATCY 2 cut(s) 133, 293
BtsCI GGATG 2 cut(s) 70, 157
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 2 cut(s) 169, 272
CviJI RGCY 8 cut(s) 102, 148, 188, 244, 281, 287, 308, 332
CviKI_1 RGCY 8 cut(s) 102, 148, 188, 244, 281, 287, 308, 332
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 135, 295
DpnII GATC 2 cut(s) 133, 293
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 172, 275
FaiI YATR 5 cut(s) 105, 140, 170, 176, 273
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 168, 271
FokI GGATG 2 cut(s) 77, 164
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 1 cut(s) 158
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 267
HapII CCGG 2 cut(s) 227, 329
Hin1II CATG 2 cut(s) 172, 275
HinfI GANTC 2 cut(s) 19, 236
HpaII CCGG 2 cut(s) 227, 329
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 4 cut(s) 23, 83, 113, 158
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 40, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 250
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 172, 275
Kzo9I GATC 2 cut(s) 133, 293
LmnI GCTCC 3 cut(s) 241, 249, 286
LweI GCATC 2 cut(s) 142, 208
MaeI CTAG 1 cut(s) 158
MalI GATC 2 cut(s) 135, 295
MboI GATC 2 cut(s) 133, 293
MboII GAAGA 2 cut(s) 28, 143
MflI RGATCY 2 cut(s) 133, 293
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 3 cut(s) 34, 78, 317
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 121, 211, 304, 348
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 227, 329
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 161, 250
NdeII GATC 2 cut(s) 133, 293
NlaIII CATG 2 cut(s) 172, 275
NspI RCATGY 1 cut(s) 275
PfeI GAWTC 2 cut(s) 19, 236
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 2 cut(s) 133, 293
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 133, 293
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 246
SetI ASST 8 cut(s) 60, 104, 150, 190, 217, 246, 283, 289
SfaNI GCATC 2 cut(s) 142, 208
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 3 cut(s) 34, 78, 317
SsiI CCGC 2 cut(s) 247, 354
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 13
TasI AATT 3 cut(s) 34, 78, 317
TfiI GAWTC 2 cut(s) 19, 236
TspDTI ATGAA 3 cut(s) 20, 60, 90
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 1 cut(s) 275
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.