Rh1CG115800

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0029471
Physical Location & Seq
Reverse (-)
25053394 .. 25059185
5792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG115800.1

Sequence Viewer

Length: 564 bp
ATGGACCATTTGATTCTGGGGAGGGTCTTTTTTAAAAAATATGTAATTTGTATGTGTCTTAGGTTCTGCACTACTCATTCTTGGTATCCATTTATGTTTCCCGGAGGCATATATTTTGCATTTTACAGTTTGATTTGCAAATTGACTTTGGTTTGTTTTATGCAGATGACAGCTCTGAAATCTGCAAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATTCAAGAGACGCTTGGTAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAGGAACTTATGGGTGAGTTGGATGCTCTAGAAGCAGACATGGGTATGGAAACTGAGTCTGATGGGGTACCATCCTATCTCCAACCTGATCAGGAATCCGATTTACATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGCCCCAGCTGGAAGATCCAATGGCCAGGCTGAGGACGAATTGGGTTTACCTGCTGTCCCTCGGGCAACACTTCGTGGATAG

Protein Analysis

187

Amino Acids

20.87

Weight (kDa)

4.44

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 56 - 156 1.6e-21 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029471)

Species Orthologous Gene IDs
pyrus_communis pycom15g36130
rosa_samantha Rh1CG115800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 400
AclWI GGATC 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 3 cut(s) 199, 227, 287
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 4 cut(s) 173, 306, 448, 491
AluI AGCT 4 cut(s) 173, 306, 448, 491
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 479, 482
ApoI RAATTY 1 cut(s) 282
Asp718I GGTACC 1 cut(s) 400
AspS9I GGNCC 2 cut(s) 4, 259
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 2 cut(s) 4, 259
BalI TGGCCA 1 cut(s) 507
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 491, 494
BccI CCATC 4 cut(s) 250, 259, 389, 412
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 2 cut(s) 480, 483
BlsI GCNGC 2 cut(s) 481, 484
Bme1390I CCNGG 2 cut(s) 102, 509
Bme18I GGWCC 2 cut(s) 4, 259
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 4, 259
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 2 cut(s) 102, 509
BmsI GCATC 1 cut(s) 346
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 3 cut(s) 274, 361, 404
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 378, 504
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 491, 494
BseYI CCCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 2 cut(s) 421, 497
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 2 cut(s) 379, 505
BspLI GGNNCC 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 2 cut(s) 421, 497
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 128, 217
BstDEI CTNAG 3 cut(s) 59, 387, 513
BstF5I GGATG 3 cut(s) 274, 361, 404
BstKTI GATC 2 cut(s) 424, 500
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 421, 497
BstMWI GCNNNNNNNGC 3 cut(s) 365, 454, 488
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 100, 507
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 491, 494
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 3 cut(s) 274, 361, 404
BveI ACCTGC 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 4, 259
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 373, 440, 476
CviJI RGCY 7 cut(s) 173, 306, 448, 485, 491, 507, 512
CviKI_1 RGCY 7 cut(s) 173, 306, 448, 485, 491, 507, 512
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 3 cut(s) 59, 387, 513
DpnI GATC 2 cut(s) 423, 499
DpnII GATC 2 cut(s) 421, 497
DraI TTTAAA 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 4, 259
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 376, 443, 479
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 524
FatI CATG 3 cut(s) 372, 439, 475
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 480, 483
FokI GGATG 3 cut(s) 281, 368, 391
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 480, 483
FspBI CTAG 1 cut(s) 362
GluI GCNGC 2 cut(s) 480, 483
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 1 cut(s) 507
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 301
Hin1II CATG 3 cut(s) 376, 443, 479
HinfI GANTC 4 cut(s) 13, 223, 389, 428
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 3 cut(s) 177, 394, 433
Hpy188III TCNNGA 5 cut(s) 227, 287, 317, 362, 425
Hpy8I GTNNAC 1 cut(s) 530
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 128, 217
HpyCH4V TGCA 7 cut(s) 69, 119, 138, 163, 185, 244, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 454, 488
HpyF3I CTNAG 3 cut(s) 59, 387, 513
Hsp92II CATG 3 cut(s) 376, 443, 479
KpnI GGTACC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 421, 497
Lsp1109I GCAGC 2 cut(s) 491, 494
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 362
MalI GATC 2 cut(s) 423, 499
MboI GATC 2 cut(s) 421, 497
MboII GAAGA 1 cut(s) 507
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 7 cut(s) 45, 140, 194, 238, 282, 451, 521
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 333, 439
MnlI CCTC 6 cut(s) 15, 98, 325, 328, 508, 552
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 2 cut(s) 33, 219
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 102, 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 365, 454, 488
NciI CCSGG 1 cut(s) 102
NdeII GATC 2 cut(s) 421, 497
NlaIII CATG 3 cut(s) 376, 443, 479
NlaIV GGNNCC 1 cut(s) 402
NspI RCATGY 1 cut(s) 479
PfeI GAWTC 3 cut(s) 13, 223, 428
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 2 cut(s) 481, 484
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 4, 259
PsuI RGATCY 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 33, 219
SatI GCNGC 2 cut(s) 480, 483
Sau3AI GATC 2 cut(s) 421, 497
Sau96I GGNCC 2 cut(s) 4, 259
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 102, 509
SduI GDGCHC 1 cut(s) 450
SetI ASST 8 cut(s) 65, 175, 264, 308, 421, 450, 493, 535
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 4, 259
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 7 cut(s) 45, 140, 194, 238, 282, 451, 521
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 100, 507
TaaI ACNGT 2 cut(s) 128, 217
TasI AATT 7 cut(s) 45, 140, 194, 238, 282, 451, 521
TfiI GAWTC 3 cut(s) 13, 223, 428
Tru1I TTAA 2 cut(s) 33, 219
Tru9I TTAA 2 cut(s) 33, 219
TseI GCWGC 2 cut(s) 479, 482
TspDTI ATGAA 2 cut(s) 224, 294
VpaK11BI GGWCC 2 cut(s) 4, 259
XapI RAATTY 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.