Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029357

Physical Location & Seq

Genomic Coordinates Forward (+)

37013978 .. 37016512

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGCTTTGGGAGCTTATCTAGACGGGGTTTTGAAGTCCGGCTGACGGGCCATCATAGAGGAAAATCTCATGGATCGTTAAATGATTTACACGACCAGCCTGTCATTGTTCAGAACAGTCGTTGGGCTAGCCTCCCCCCAGAACTATTATATGATGTCATTAGGAGGCTGGAGGAGAGTGAGAGCACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCCTCAGTTTGCCGTTCTTGGAGGATTATGTGCAAAGAAATCGTTAAGAAGCCTGAGATCTGTGGGAAGCTTACTTTTCCTGTGTCGCTAAAGCAGCCAGGTCCACGGGATGGACTCGTTCAATGCTTCATTAAAAGGGATAAATCTAATTTAACATACCACCTATTTCTCTGTCTTAGCCCTGCTTTGCTAGTTGAGAATGGGAAATTCCTTCTTTCTGCAAAGAGGACTCGAAGAACTACTTATACAGAATATGTTATCTCTATGGATGCTGACAATGTGCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

181

Amino Acids

20.67

Weight (kDa)

9.69

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029357)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g19540 pycom15g37080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	362
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	79, 362
AgsI	TTSAA	2 cut(s)	68, 374
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	2 cut(s)	48, 322
AluI	AGCT	2 cut(s)	48, 322
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	82, 224
ApeKI	GCWGC	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	82, 353
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	29, 93, 356
BceAI	ACGGC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	351
BfaI	CTAG	4 cut(s)	54, 162, 443, 541
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	82, 353
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 362
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	40, 367, 526
BseLI	CCNNNNNNNGG	2 cut(s)	79, 362
BseMII	CTCAG	2 cut(s)	270, 297
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	2 cut(s)	84, 226
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	79, 362
BsnI	GGCC	2 cut(s)	84, 226
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	107, 309
BspANI	GGCC	2 cut(s)	84, 226
BspCNI	CTCAG	2 cut(s)	269, 298
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	107, 309
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	256, 306, 428
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	3 cut(s)	40, 367, 526
BstKTI	GATC	2 cut(s)	110, 312
BstMBI	GATC	2 cut(s)	107, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 346
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	84, 226
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	40, 367, 526
Cac8I	GCNNGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	82, 353
CviAII	CATG	3 cut(s)	104, 222, 249
DdeI	CTNAG	3 cut(s)	256, 306, 428
DpnI	GATC	2 cut(s)	109, 311
DpnII	GATC	2 cut(s)	107, 309
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	3 cut(s)	107, 225, 252
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FatI	CATG	3 cut(s)	103, 221, 248
Fnu4HI	GCNGC	1 cut(s)	347
FokI	GGATG	3 cut(s)	47, 374, 533
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	4 cut(s)	54, 162, 443, 541
GluI	GCNGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	84, 226
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	3 cut(s)	107, 225, 252
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	366, 481
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	23, 54, 231
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	237, 473
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	248, 285, 473, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 346
HpyF3I	CTNAG	3 cut(s)	256, 306, 428
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	107, 225, 252
Kzo9I	GATC	2 cut(s)	107, 309
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	4 cut(s)	54, 162, 443, 541
MaeII	ACGT	1 cut(s)	240
MalI	GATC	2 cut(s)	109, 311
MboI	GATC	2 cut(s)	107, 309
MboII	GAAGA	1 cut(s)	498
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	2 cut(s)	400, 458
MlyI	GAGTC	2 cut(s)	360, 475
MnlI	CCTC	7 cut(s)	86, 176, 192, 199, 265, 267, 471
MseI	TTAA	4 cut(s)	113, 297, 384, 404
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	45, 346
NdeII	GATC	2 cut(s)	107, 309
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	107, 225, 252
NspI	RCATGY	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	348
PleI	GAGTC	2 cut(s)	360, 475
PpsI	GAGTC	2 cut(s)	360, 475
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	82, 353
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PsuI	RGATCY	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	113, 297, 384, 404
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	2 cut(s)	107, 309
Sau96I	GGNCC	2 cut(s)	82, 353
SchI	GAGTC	2 cut(s)	360, 475
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	50, 243, 324, 355, 417
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	400, 458
SspMI	CTAG	4 cut(s)	54, 162, 443, 541
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	232, 484
TasI	AATT	2 cut(s)	400, 458
Tru1I	TTAA	4 cut(s)	113, 297, 384, 404
Tru9I	TTAA	4 cut(s)	113, 297, 384, 404
TseI	GCWGC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	4 cut(s)	54, 162, 443, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.