Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024703

Physical Location & Seq

Genomic Coordinates Reverse (-)

38895769 .. 38896070

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGAGGGCATACCGCACCCAATACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCAGACGCGCCGGCTTGATTAAGGCCCTCACCAATGACGTTCAGAAATTTTATCAACTGTGCGATCCTGGTGAGTTCTCTTTTCTTTTTCTTTTTTTTACGTTTATGTTCTCTTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

61

Amino Acids

7.09

Weight (kDa)

5.62

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 44	2.3e-11	Alfin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024703)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g39170
rosa_chinensis	RchiOBHm_Chr3g0479081
rosa_samantha	Rh7AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	31, 40
AjnI	CCWGG	1 cut(s)	127
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	82, 143
BbsI	GAAGAC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	72
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	34, 120
BstC8I	GCNNGC	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
CviJI	RGCY	2 cut(s)	75, 86
CviKI_1	RGCY	2 cut(s)	75, 86
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	31, 40
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	127
FaiI	YATR	2 cut(s)	11, 167
GlaI	GCGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	82, 143
Hpy188I	TCNGA	2 cut(s)	59, 105
HpyCH4III	ACNGT	2 cut(s)	34, 120
HpyCH4IV	ACGT	2 cut(s)	99, 161
HpySE526I	ACGT	2 cut(s)	99, 161
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	85, 114, 141
MaeII	ACGT	2 cut(s)	99, 161
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	37
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	4 cut(s)	31, 36, 53, 98
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	69
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	124
NgoMIV	GCCGGC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	3 cut(s)	28, 102, 164
SgeI	CNNG	6 cut(s)	39, 80, 84, 88, 140, 141
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	34, 120
TaiI	ACGT	2 cut(s)	102, 164
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	39
TspRI	CASTG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.