Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0024703

Physical Location & Seq

Genomic Coordinates Forward (+)

36216527 .. 36221665

Gene Structure 5139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG319900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGGGCATACCGCACCCAGTACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCCGACGCGCCGGTTTGATTAAGGCCCTCACCACCGGCAAGATGCAACTGCTCATGCAAAGGAGGGTTTCAGGTAAGTCACTCAGAGATGTACTGGAAGGCTTTGGTTCTTATTATGGCACCAAGGTTTGGGTGGACAATTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0006950 GO:0006970 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016036 GO:0016049 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0034248 GO:0034250 GO:0040007 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0060560 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071472 GO:0071496 GO:0071695 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098771 GO:0099402 GO:0104004 GO:1901363 GO:1905392 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

69

Amino Acids

7.9

Weight (kDa)

9.98

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024703)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g39170
rosa_chinensis	RchiOBHm_Chr3g0479081
rosa_samantha	Rh7AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	2 cut(s)	24, 153
AfiI	CCNNNNNNNGG	1 cut(s)	189
AoxI	GGCC	2 cut(s)	61, 84
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	2 cut(s)	71, 95
Bse1I	ACTGG	2 cut(s)	20, 159
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	20, 159
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	63, 86
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	72, 96
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	2 cut(s)	63, 86
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	63, 86
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	71, 95
BsrI	ACTGG	2 cut(s)	20, 159
BssAI	RCCGGY	2 cut(s)	71, 95
BssECI	CCNNGG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	63, 86
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	2 cut(s)	71, 95
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	23, 152
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	63, 86, 162
CviKI_1	RGCY	3 cut(s)	63, 86, 162
CviQI	GTAC	2 cut(s)	23, 152
DdeI	CTNAG	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	31, 40
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	11, 116, 177
FatI	CATG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	63, 86
HapII	CCGG	2 cut(s)	72, 96
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	72, 96
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	59, 146
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	106, 118
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	33, 85, 109, 117, 140
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	199
MluCI	AATT	1 cut(s)	199
MnlI	CCTC	5 cut(s)	31, 36, 53, 98, 117
MseI	TTAA	1 cut(s)	81
MspI	CCGG	2 cut(s)	72, 96
MunI	CAATTG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	24, 153
RsaNI	GTAC	2 cut(s)	23, 152
SaqAI	TTAA	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	85
SetI	ASST	3 cut(s)	28, 136, 189
SfaNI	GCATC	1 cut(s)	93
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	199
TatI	WGTACW	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	138
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.