Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0026675

Physical Location & Seq

Genomic Coordinates Reverse (-)

41634 .. 41918

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCAGCCGTACGCGTGAAAGCCGCAGTAGCACTATTACTACTGCTAACGGTGGCCGCTCTCCTCCTCCTAATTAGCAGCTGCGCCGCCACCACCACCACCATCACCAATTCTACAACTACTTCCCCAACGTACCCTGATTTTCAAGAGCTGAACGTGAAAGAAACAGTCATGGCGATTCAAATAAATAGCAGGGCACCTAGGGCTGCATACAACGTCACCATAAGTACCACCACCGGCAGCAAATTAAATGATGATGATGATAAAGATGAATCAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

95

Amino Acids

10.0

Weight (kDa)

4.81

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10760
pyrus_communis	pycom16g00080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	24, 57, 87
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	3 cut(s)	12, 134, 229
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	146, 182
AluBI	AGCT	2 cut(s)	81, 151
AluI	AGCT	2 cut(s)	81, 151
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	5 cut(s)	5, 78, 81, 206, 240
AspA2I	CCTAGG	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	97, 211
AvrII	CCTAGG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	17, 68, 90, 193, 252
BccI	CCATC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	8 cut(s)	6, 24, 57, 79, 82, 87, 207, 241
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	8 cut(s)	7, 25, 58, 80, 83, 88, 208, 242
BmiI	GGNNCC	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	53, 56
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	5 cut(s)	17, 68, 90, 193, 252
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	237
BsiWI	CGTACG	1 cut(s)	10
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	3 cut(s)	24, 57, 87
BspANI	GGCC	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	52, 169
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 203
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	17, 68, 90, 193, 252
Bsu15I	ATCGAT	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	280
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	11, 133, 228
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	8, 23, 56, 81, 151, 206
CviKI_1	RGCY	6 cut(s)	8, 23, 56, 81, 151, 206
CviQI	GTAC	3 cut(s)	11, 133, 228
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 211, 224
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	8 cut(s)	6, 24, 57, 79, 82, 87, 207, 241
Fsp4HI	GCNGC	8 cut(s)	6, 24, 57, 79, 82, 87, 207, 241
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	8 cut(s)	6, 24, 57, 79, 82, 87, 207, 241
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	178, 272
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	97, 211
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	52, 169
HpyCH4IV	ACGT	3 cut(s)	131, 156, 216
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 203
HpySE526I	ACGT	3 cut(s)	131, 156, 216
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	150, 178, 250
Lsp1109I	GCAGC	5 cut(s)	17, 68, 90, 193, 252
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	3 cut(s)	131, 156, 216
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	72, 109, 245
MluI	ACGCGT	1 cut(s)	13
MnlI	CCTC	2 cut(s)	74, 77
MseI	TTAA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	29, 203
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	178, 272
Pfl23II	CGTACG	1 cut(s)	10
PkrI	GCNGC	8 cut(s)	7, 25, 58, 80, 83, 88, 208, 242
PspLI	CGTACG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	81
RsaI	GTAC	3 cut(s)	12, 134, 229
RsaNI	GTAC	3 cut(s)	11, 133, 228
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	8 cut(s)	6, 24, 57, 79, 82, 87, 207, 241
Sau3AI	GATC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	83, 134, 153, 159, 202, 219
SgeI	CNNG	9 cut(s)	26, 28, 149, 158, 169, 184, 205, 213, 249
Sse9I	AATT	3 cut(s)	72, 109, 245
SsiI	CCGC	3 cut(s)	24, 57, 87
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	52, 169
TaiI	ACGT	3 cut(s)	134, 159, 219
TaqI	TCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	72, 109, 245
TauI	GCSGC	3 cut(s)	26, 59, 89
TfiI	GAWTC	2 cut(s)	178, 272
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	5 cut(s)	5, 78, 81, 206, 240
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.