Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029435

Physical Location & Seq

Genomic Coordinates Forward (+)

642362 .. 642865

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAAACTGTCACTACCTTGCGATGGTGGTGAAAGAAGGAGTGGAAAAAACCGGGCAGTTTAAGATACTGTCAAAGGACATTGGGGTTCCGGTGGTGGCCTTTTCACTAAAGGACAGAAGCCGTTACGATGAGTTTAAGGTGTCGGAGGGTTTGCGTCGGCACCAATTTATTGTGCCTGCATATCACATGCCAGCGGATGCTAAGCATGTGGCCTTGCTCCGTGTTGTCATAAGGGGAGACTTCTCTCGCACTAGGGCTGAGTACCTTCTGGCCAGCATCAACGCTGTGCTGAAAGAGCTCGATGAGCTGCATCCTGTTGCTGCCATTCAAGAAAATGGTCATCATAAACTGTCTCTAATTGGAGTTGCAAATGGAAACGGCGAGTTGCCACCAGCTGCTGCCGTTGAAAATTGTCATCACAAAGTGTGTGCAATTGGAGCTGCAAATGGAAACGGTGGGACAGAGAACGGCCAGATGACGGACGGTGCAAAATGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

168

Amino Acids

18.17

Weight (kDa)

7.12

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029435)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01160 pycom16g01060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	273, 472
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	25, 481
AgsI	TTSAA	2 cut(s)	332, 410
AluBI	AGCT	4 cut(s)	301, 310, 398, 443
AluI	AGCT	4 cut(s)	301, 310, 398, 443
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	234, 360
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	4 cut(s)	99, 213, 273, 472
ApeKI	GCWGC	5 cut(s)	310, 323, 398, 401, 443
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	4 cut(s)	108, 389, 397, 487
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	234, 360
BfaI	CTAG	2 cut(s)	255, 502
BisI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	312, 325, 400, 403, 445
Bme1390I	CCNGG	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	90, 164
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	190, 288, 322
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 481
BseGI	GGATG	2 cut(s)	205, 313
BseLI	CCNNNNNNNGG	2 cut(s)	25, 481
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BshFI	GGCC	4 cut(s)	101, 215, 275, 474
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	54, 92
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	25, 481
BsmAI	GTCTC	2 cut(s)	234, 360
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	101, 215, 275, 474
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	4 cut(s)	101, 215, 275, 474
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	90, 164
BspT107I	GGYRCC	1 cut(s)	162
Bst4CI	ACNGT	5 cut(s)	11, 72, 354, 458, 488
BstC8I	GCNNGC	3 cut(s)	180, 195, 277
BstDEI	CTNAG	2 cut(s)	204, 261
BstF5I	GGATG	2 cut(s)	205, 313
BstMAI	GTCTC	2 cut(s)	234, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
BstNSI	RCATGY	2 cut(s)	193, 212
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BsuRI	GGCC	4 cut(s)	101, 215, 275, 474
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	205, 313
Cac8I	GCNNGC	3 cut(s)	180, 195, 277
CaiI	CAGNNNCTG	1 cut(s)	401
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	190, 209
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	204, 261
DraIII	CACNNNGTG	1 cut(s)	427
EaeI	YGGCCR	2 cut(s)	273, 472
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	2 cut(s)	193, 212
FaiI	YATR	5 cut(s)	184, 191, 210, 233, 348
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	189, 208
Fnu4HI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
FokI	GGATG	2 cut(s)	212, 300
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
FspBI	CTAG	2 cut(s)	255, 502
GluI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
HaeIII	GGCC	4 cut(s)	101, 215, 275, 474
HapII	CCGG	2 cut(s)	54, 92
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	193, 212
HpaII	CCGG	2 cut(s)	54, 92
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	32, 278
HpyCH4III	ACNGT	5 cut(s)	11, 72, 354, 458, 488
HpyCH4V	TGCA	6 cut(s)	182, 313, 371, 434, 446, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
HpyF3I	CTNAG	2 cut(s)	204, 261
Hsp92II	CATG	2 cut(s)	193, 212
LmnI	GCTCC	2 cut(s)	225, 440
LpnPI	CCDG	9 cut(s)	67, 105, 192, 207, 257, 289, 330, 408, 488
Lsp1109I	GCAGC	5 cut(s)	297, 310, 385, 388, 430
LweI	GCATC	3 cut(s)	190, 288, 322
MaeI	CTAG	2 cut(s)	255, 502
MaeIII	GTNAC	2 cut(s)	11, 125
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	167, 360, 412, 435
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	63, 138
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	197, 398
MspI	CCGG	2 cut(s)	54, 92
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	2 cut(s)	193, 212
NlaIV	GGNNCC	2 cut(s)	90, 164
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	2 cut(s)	193, 212
PkrI	GCNGC	5 cut(s)	312, 325, 400, 403, 445
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	90, 164
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	63, 138
SatI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	21, 144, 270, 303, 312, 400, 445
SfaNI	GCATC	3 cut(s)	190, 288, 322
Sse9I	AATT	4 cut(s)	167, 360, 412, 435
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	255, 502
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	5 cut(s)	11, 72, 354, 458, 488
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	167, 360, 412, 435
Tru1I	TTAA	2 cut(s)	63, 138
Tru9I	TTAA	2 cut(s)	63, 138
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	5 cut(s)	310, 323, 398, 401, 443
Tsp45I	GTSAC	1 cut(s)	11
TspGWI	ACGGA	2 cut(s)	212, 497
XceI	RCATGY	2 cut(s)	193, 212
XspI	CTAG	2 cut(s)	255, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.