Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0028521

Physical Location & Seq

Genomic Coordinates Forward (+)

1532481 .. 1532751

Gene Structure 271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGACATGGTGCAGACCGGTCTTAGGGGCATCGATGGACCCTGCACGGAGCCAAGGGCCAGCAATAGTGATGCACACAGACAAGGGAATATGGATTTATATTGTAGGTCCATTCGTTGGCACCATATATACTCGAGAGGTAACTGACAAAACAAATACTGCGGAAGTTAAGAAGAGTGCTTCCTTCATCAAATACGTTTCCAAAAACAATTTTTCTAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

75

Amino Acids

8.27

Weight (kDa)

9.73

Isoelectric Point (pI)

17.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028521)

Species	Orthologous Gene IDs
malus_domestica	MD16G1028100.v1.1
pyrus_communis	pycom16g02400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	116
AciI	CCGC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	23, 116
AgeI	ACCGGT	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	56
AsiGI	ACCGGT	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	37, 56, 107
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	2 cut(s)	37, 107
BanI	GGYRCC	1 cut(s)	119
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	37, 107
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	37, 56, 107
BmiI	GGNNCC	3 cut(s)	39, 50, 121
BmsI	GCATC	2 cut(s)	38, 60
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 116
Bse118I	RCCGGY	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	23, 116
BsgI	GTGCAG	2 cut(s)	27, 31
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	23, 116
BsnI	GGCC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	39, 50, 121
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	37, 56, 107
ClaI	ATCGAT	1 cut(s)	32
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	2 cut(s)	51, 58
CviKI_1	RGCY	2 cut(s)	51, 58
DdeI	CTNAG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	37, 107
Eco88I	CYCGRG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	9
FaiI	YATR	6 cut(s)	7, 91, 99, 125, 127, 129
FatI	CATG	1 cut(s)	5
FspBI	CTAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	1 cut(s)	9
HpaII	CCGG	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	134, 216
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	12, 44, 73
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	3 cut(s)	30, 54, 72
LweI	GCATC	2 cut(s)	38, 60
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	184
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	168, 223
MspI	CCGG	1 cut(s)	17
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	3 cut(s)	39, 50, 121
PaeR7I	CTCGAG	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	39, 50, 121
PspPI	GGNCC	3 cut(s)	37, 56, 107
SaqAI	TTAA	2 cut(s)	168, 223
Sau96I	GGNCC	3 cut(s)	37, 56, 107
SetI	ASST	3 cut(s)	109, 141, 198
SfaNI	GCATC	2 cut(s)	38, 60
Sfr274I	CTCGAG	1 cut(s)	132
SgeI	CNNG	9 cut(s)	18, 29, 53, 57, 65, 71, 94, 144, 146
SinI	GGWCC	2 cut(s)	37, 107
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	52
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	32, 133
TasI	AATT	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	168, 223
Tru9I	TTAA	2 cut(s)	168, 223
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	37, 107
XbaI	TCTAGA	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	132
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.