Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024686

Physical Location & Seq

Genomic Coordinates Forward (+)

2417279 .. 2417890

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGACCAGCGACGCCCAGGACTCGCATCGCAAGCACCGTGGTGCCTCTTCCGATGACGAAGAGGCCGTCGAGAAGTCGTCCAAGCGCCACAGGCACCGCCACCACCATCGTCACCGTCACGGCAGCAAAAAGCGCGAAGAGGAGACCAAGGCCGTCGTTGACGATGTCGAAGCTCCTTCACCGCGGCCTGTTGAGTTATATGATTCCGGTGTCAATGGTTCTATGCCGGTTGAAGACGTGGAGGAAGGCGAAATTCTCGACGAGGAGGGTGTCGGTGGTCGAGATGATGGCGTTTCCAATGCGGATGATCGGGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

107

Amino Acids

11.86

Weight (kDa)

5.28

Isoelectric Point (pI)

66.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024686)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g03840 pycom16g03880 pycom16g03890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 93
AccII	CGCG	2 cut(s)	135, 184
AciI	CCGC	4 cut(s)	97, 182, 184, 302
AcsI	RAATTY	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	3 cut(s)	63, 150, 185
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AspLEI	GCGC	2 cut(s)	87, 135
AsuHPI	GGTGA	2 cut(s)	104, 171
BanI	GGYRCC	2 cut(s)	41, 93
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	114, 281
BceAI	ACGGC	3 cut(s)	50, 136, 137
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	124, 185
BlsI	GCNGC	2 cut(s)	125, 186
Bme1390I	CCNGG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	43, 95
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	15, 37, 147, 182
BsaWI	WCCGGW	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	15, 37, 147, 182
BseGI	GGATG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	155, 278
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	135, 184
BshFI	GGCC	3 cut(s)	65, 152, 187
BshNI	GGYRCC	2 cut(s)	41, 93
BsiSI	CCGG	2 cut(s)	207, 227
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	65, 152, 187
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	4 cut(s)	97, 182, 184, 302
BspANI	GGCC	3 cut(s)	65, 152, 187
BspFNI	CGCG	2 cut(s)	135, 184
BspLI	GGNNCC	2 cut(s)	43, 95
BspT107I	GGYRCC	2 cut(s)	41, 93
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	15, 37, 147, 182
BssMI	GATC	1 cut(s)	307
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	38, 116
Bst6I	CTCTTC	3 cut(s)	52, 54, 132
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	32
BstDSI	CCRYGG	2 cut(s)	37, 182
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	135, 184
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 135
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 91, 132
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	2 cut(s)	135, 184
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	65, 152, 187
BtgI	CCRYGG	2 cut(s)	37, 182
BtgZI	GCGATG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	2 cut(s)	87, 135
Cfr10I	RCCGGY	1 cut(s)	226
Cfr42I	CCGCGG	1 cut(s)	185
CseI	GACGC	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviJI	RGCY	4 cut(s)	65, 152, 173, 187
CviKI_1	RGCY	4 cut(s)	65, 152, 173, 187
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	3 cut(s)	52, 54, 132
EarI	CTCTTC	3 cut(s)	52, 54, 132
Eco130I	CCWWGG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	4 cut(s)	199, 201, 224, 319
Fnu4HI	GCNGC	2 cut(s)	124, 185
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	124, 185
GlaI	GCGC	2 cut(s)	86, 134
GluI	GCNGC	2 cut(s)	124, 185
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	65, 152, 187
HapII	CCGG	2 cut(s)	207, 227
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	87, 135
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	85, 133
HinP1I	GCGC	2 cut(s)	85, 133
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	20, 203
HpaII	CCGG	2 cut(s)	207, 227
HphI	GGTGA	2 cut(s)	104, 171
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	70, 257, 281
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	4 cut(s)	14, 71, 158, 263
HpyAV	CCTTC	2 cut(s)	186, 239
HpyCH4III	ACNGT	2 cut(s)	38, 116
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 91, 132
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	2 cut(s)	85, 133
KspI	CCGCGG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	2, 19, 29, 76, 201, 220, 240
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	110, 116
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	39, 71, 149, 245
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	6 cut(s)	55, 55, 133, 235, 256, 259
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	207, 227
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	2 cut(s)	135, 184
MwoI	GCNNNNNNNGC	3 cut(s)	31, 91, 132
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	43, 95
NmuCI	GTSAC	2 cut(s)	110, 116
OliI	CACNNNNGTG	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	34, 63
PfeI	GAWTC	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	125, 186
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	43, 95
PsyI	GACNNNGTC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	39
SacII	CCGCGG	1 cut(s)	185
SatI	GCNGC	2 cut(s)	124, 185
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	2 cut(s)	175, 240
SfaNI	GCATC	1 cut(s)	34
Sfr303I	CCGCGG	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	4 cut(s)	97, 182, 184, 302
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	38, 116
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	69, 168, 258, 280
TasI	AATT	1 cut(s)	252
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	110, 116
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	110, 116
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.