pycom16g03890

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0024686
Physical Location & Seq
Forward (+)
2418014 .. 2419781
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g03890.1

Sequence Viewer

Length: 1494 bp
ATGAAAGACAATGACATAAATAAAAATACAAAGACCGTGGGACACCTGCATGATGATGATGATGATGATGATGCCCGCGGTTGTGTTGGTGGCAAGTCTCGGAATGAGGCTGGTTTGCCTAGAGATTCTATTGTTGAGCCTCAAGATGAATTAGTTTCCAGTGGTAGTGTAAAGGATCATGCAAATGGGGATTTGGACTACCAATCTCACAGAGAGGAGAAGAGGCGACACAGGGAGTCTGGGTCTCCTTCTAGAGGAAGTGATAAGAGAAAGAATTACTATGATGATGAAAAACTGTATGAAGATGGAAGTAAATCAGCTGATTGGAAAAAGTTATCCTCTGGAAGTAGTGGGGACAAGTACAATACCTTGGTGCGTTCACCATCTTGTGATAGGCGCGGTGACGAGCTACATGGTAGGGGCAGATCAAGGTCATATGATCGTTTGAGGGAGAGATCTCGTTCCCGCAGTATAATAGAAGAAGAGCCTCTTTCGAAGAGGAGACGTTATCATGAACGGGACACCTCTGCGTATGTTGAGAAAAGCAAGGCTGTGCACGGCTCTGATGATGAAAGATTGGCTCCGGGTATTGACAGTGTCGATCTGAGGAGGGATGATGAAAGGGAACACAATATTAGTTATGGCAGATACTCCGGATTAGGCCATAGTCGAGAAAGAGAGAGAAGTAGGGGGAGGGAGGTGGATCAGGAGCAGAGAAGGGAGAAAGATCAAGAAAGAATCAGGGACAGCGAACGGAGAAGGGAGAAAGAAAGAGAAAGGAGTAGGGATGGGAAAAGGGGAATAGGACGAGAGCATAGCAGGGAAAGAGTGGTTTATATGGAAAGGAGAAGGGAAGAGCGACATAGGAGCAGGGACATTGAGAATAGGGATAGGAATAGGGATGATAGTAATAGGAGCAGGGACAGGGTCAAGGATGATAGGGACAGAAACATGGACAGGGGCCGAGATAGGGACAGAGATATAGACCGAAAATGGGAGAGGCAAGATGATAGAGACAGGGATAGGGGTCGAGATATGGAGAGGGAGAAATATGAACATCATGAGGATGGCTATGGAAACCGAGATAGGCATAAATCTGCTCGATCAAGGCGCGATGGAAAAGAATACGACCAGGACAGAAGAAGTAAAACTGATCCAGCAAAGGTACAGAGTCCAAAGAATTATTCTGTCGAAGGGGATGAAGACATGTTAGAAAGAGATGAAGATGAAGACGAAAGCATTCAAGTTGCTGGCCAGGAAGAGGATGATGTGGATAGAATCAAGGAAGAGTCTCGGAGAATAAAACAAGCCATCTTAGAAAAATATAAAAGTCAGCAGTCACAGCAAACAAAAGAGTTGCGTCTACAAGAACAAACTGAGTCACAATTGCAGAAGCATTTTGAGCCTCAGCCTCTGGAGCAATCAGCGGATAAAGGTCCTGCAGATCGATCTGGAGCAATCAGCAGCTTCTGTCAAACCTGGTCTAGAAACTGA

Protein Analysis

498

Amino Acids

59.08

Weight (kDa)

6.65

Isoelectric Point (pI)

73.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024686)

Species Orthologous Gene IDs
pyrus_communis pycom13g03840 pycom16g03880 pycom16g03890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 1363
AccII CGCG 3 cut(s) 78, 399, 1113
AccIII TCCGGA 1 cut(s) 653
AciI CCGC 5 cut(s) 76, 78, 399, 466, 1427
AclWI GGATC 3 cut(s) 183, 711, 1148
AcoI YGGCCR 1 cut(s) 1252
AfaI GTAC 2 cut(s) 362, 1167
AfiI CCNNNNNNNGG 4 cut(s) 254, 970, 994, 1261
AflIII ACRYGT 1 cut(s) 1206
AgsI TTSAA 1 cut(s) 1244
AjnI CCWGG 3 cut(s) 1131, 1254, 1478
AjuI GAANNNNNNNTTGG 2 cut(s) 1168, 1200
AluBI AGCT 3 cut(s) 320, 409, 1467
AluI AGCT 3 cut(s) 320, 409, 1467
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 5 cut(s) 102, 249, 496, 1008, 1296
Alw44I GTGCAC 1 cut(s) 554
AlwI GGATC 3 cut(s) 183, 711, 1148
AlwNI CAGNNNCTG 2 cut(s) 1414, 1470
Aor13HI TCCGGA 1 cut(s) 653
AoxI GGCC 3 cut(s) 661, 961, 1252
ApaLI GTGCAC 1 cut(s) 554
ApeKI GCWGC 1 cut(s) 1464
Asp700I GAANNNNTTC 1 cut(s) 1239
AspLEI GCGC 2 cut(s) 399, 1113
AspS9I GGNCC 2 cut(s) 961, 1436
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 2 cut(s) 372, 413
AsuII TTCGAA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 1436
BaeGI GKGCMC 1 cut(s) 558
BalI TGGCCA 1 cut(s) 1254
BbsI GAAGAC 2 cut(s) 1209, 1236
Bbv12I GWGCWC 1 cut(s) 558
BbvCI CCTCAGC 1 cut(s) 1407
BbvI GCAGC 1 cut(s) 1476
BccI CCATC 6 cut(s) 299, 391, 782, 1061, 1109, 1319
BceAI ACGGC 1 cut(s) 574
BciT130I CCWGG 3 cut(s) 1133, 1256, 1480
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 5 cut(s) 102, 249, 496, 1008, 1296
BfaI CTAG 3 cut(s) 120, 252, 1485
BfmI CTRYAG 1 cut(s) 1440
BfuAI ACCTGC 1 cut(s) 54
BglII AGATCT 1 cut(s) 455
BisI GCNGC 1 cut(s) 1465
BlsI GCNGC 1 cut(s) 1466
Bme1390I CCNGG 4 cut(s) 585, 1133, 1256, 1480
Bme18I GGWCC 1 cut(s) 1436
BmgT120I GGNCC 2 cut(s) 961, 1436
BmiI GGNNCC 2 cut(s) 582, 962
BmrFI CCNGG 4 cut(s) 585, 1133, 1256, 1480
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 1209, 1236
BpmI CTGGAG 2 cut(s) 1436, 1473
Bpu10I CCTNAGC 1 cut(s) 1407
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 1447
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 36, 76, 369
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 970, 994, 1261
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 653
BseBI CCWGG 3 cut(s) 1133, 1256, 1480
BseCI ATCGAT 1 cut(s) 1447
BseDI CCNNGG 3 cut(s) 36, 76, 369
BseGI GGATG 7 cut(s) 619, 793, 907, 940, 1072, 1204, 1270
BseLI CCNNNNNNNGG 4 cut(s) 254, 970, 994, 1261
BseMII CTCAG 3 cut(s) 596, 1368, 1421
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 230, 514, 622
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 1 cut(s) 1476
Bsh1236I CGCG 3 cut(s) 78, 399, 1113
BshFI GGCC 3 cut(s) 663, 963, 1254
BshVI ATCGAT 1 cut(s) 1447
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 2 cut(s) 584, 654
BslFI GGGAC 8 cut(s) 54, 368, 533, 758, 887, 935, 956, 986
BslI CCNNNNNNNGG 4 cut(s) 254, 970, 994, 1261
BsmAI GTCTC 5 cut(s) 102, 249, 496, 1008, 1296
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 8 cut(s) 54, 368, 533, 758, 887, 935, 956, 986
BsmI GAATGC 1 cut(s) 1239
BsnI GGCC 3 cut(s) 663, 963, 1254
Bso31I GGTCTC 1 cut(s) 249
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 558
Bsp13I TCCGGA 1 cut(s) 653
BspACI CCGC 5 cut(s) 76, 78, 399, 466, 1427
BspANI GGCC 3 cut(s) 663, 963, 1254
BspCNI CTCAG 3 cut(s) 597, 1369, 1420
BspDI ATCGAT 1 cut(s) 1447
BspEI TCCGGA 1 cut(s) 653
BspFNI CGCG 3 cut(s) 78, 399, 1113
BspHI TCATGA 2 cut(s) 511, 1060
BspLI GGNNCC 2 cut(s) 582, 962
BspMAI CTGCAG 1 cut(s) 1444
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 3 cut(s) 183, 711, 1148
BspQI GCTCTTC 2 cut(s) 477, 849
BspT104I TTCGAA 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 36, 76, 369
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 3 cut(s) 1133, 1256, 1480
Bst4CI ACNGT 3 cut(s) 37, 297, 596
Bst6I CTCTTC 6 cut(s) 215, 477, 491, 849, 1254, 1281
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 76, 1252
BstDEI CTNAG 4 cut(s) 605, 1315, 1377, 1407
BstDSI CCRYGG 2 cut(s) 36, 76
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 7 cut(s) 619, 793, 907, 940, 1072, 1204, 1270
BstFNI CGCG 3 cut(s) 78, 399, 1113
BstHHI GCGC 2 cut(s) 399, 1113
BstMAI GTCTC 5 cut(s) 102, 249, 496, 1008, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 1342, 1402, 1417
BstNI CCWGG 3 cut(s) 1133, 1256, 1480
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 4 cut(s) 583, 1131, 1254, 1478
BstSFI CTRYAG 1 cut(s) 1440
BstSLI GKGCMC 1 cut(s) 558
BstUI CGCG 3 cut(s) 78, 399, 1113
BstV1I GCAGC 1 cut(s) 1476
BstV2I GAAGAC 2 cut(s) 1209, 1236
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 1447
BsuRI GGCC 3 cut(s) 663, 963, 1254
BsuTUI ATCGAT 1 cut(s) 1447
BtgI CCRYGG 2 cut(s) 36, 76
BtgZI GCGATG 1 cut(s) 1128
BtsCI GGATG 7 cut(s) 619, 793, 907, 940, 1072, 1204, 1270
BtsIMutI CAGTG 2 cut(s) 166, 601
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 76, 1252
CaiI CAGNNNCTG 2 cut(s) 1414, 1470
CciI TCATGA 2 cut(s) 511, 1060
CfoI GCGC 2 cut(s) 399, 1113
Cfr13I GGNCC 2 cut(s) 961, 1436
Cfr42I CCGCGG 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 1447
CseI GACGC 1 cut(s) 1349
CsiI ACCWGGT 1 cut(s) 1478
Csp6I GTAC 2 cut(s) 361, 1166
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 7 cut(s) 50, 179, 413, 512, 952, 1061, 1207
CviQI GTAC 2 cut(s) 361, 1166
DdeI CTNAG 4 cut(s) 605, 1315, 1377, 1407
EaeI YGGCCR 1 cut(s) 1252
Eam1104I CTCTTC 6 cut(s) 215, 477, 491, 849, 1254, 1281
EarI CTCTTC 6 cut(s) 215, 477, 491, 849, 1254, 1281
Eco130I CCWWGG 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 1436
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 1436
EcoRII CCWGG 3 cut(s) 1131, 1254, 1478
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 7 cut(s) 53, 182, 416, 515, 955, 1064, 1210
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 8 cut(s) 54, 368, 533, 758, 887, 935, 956, 986
FatI CATG 7 cut(s) 49, 178, 412, 511, 951, 1060, 1206
FauI CCCGC 2 cut(s) 83, 473
FauNDI CATATG 1 cut(s) 436
FblI GTMKAC 1 cut(s) 1363
Fnu4HI GCNGC 1 cut(s) 1465
FokI GGATG 7 cut(s) 626, 800, 914, 947, 1079, 1211, 1277
Fsp4HI GCNGC 1 cut(s) 1465
FspBI CTAG 3 cut(s) 120, 252, 1485
GlaI GCGC 2 cut(s) 398, 1112
GluI GCNGC 1 cut(s) 1465
GsuI CTGGAG 2 cut(s) 1436, 1473
HaeIII GGCC 3 cut(s) 663, 963, 1254
HapII CCGG 2 cut(s) 584, 654
HgaI GACGC 1 cut(s) 1349
HhaI GCGC 2 cut(s) 399, 1113
Hin1II CATG 7 cut(s) 53, 182, 416, 515, 955, 1064, 1210
Hin6I GCGC 2 cut(s) 397, 1111
HinP1I GCGC 2 cut(s) 397, 1111
HinfI GANTC 7 cut(s) 125, 236, 738, 1171, 1278, 1289, 1379
HpaII CCGG 2 cut(s) 584, 654
HphI GGTGA 2 cut(s) 372, 413
Hpy166II GTNNAC 3 cut(s) 380, 556, 1364
Hpy188I TCNGA 4 cut(s) 102, 565, 606, 1296
Hpy8I GTNNAC 3 cut(s) 380, 556, 1364
HpyAV CCTTC 5 cut(s) 258, 711, 753, 843, 1187
HpyCH4III ACNGT 3 cut(s) 37, 297, 596
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 49, 182, 556, 1390, 1442
HpyF10VI GCNNNNNNNGC 3 cut(s) 1342, 1402, 1417
HpyF3I CTNAG 4 cut(s) 605, 1315, 1377, 1407
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 7 cut(s) 53, 182, 416, 515, 955, 1064, 1210
HspAI GCGC 2 cut(s) 397, 1111
Kpn2I TCCGGA 1 cut(s) 653
KspI CCGCGG 1 cut(s) 79
LguI GCTCTTC 2 cut(s) 477, 849
LmnI GCTCC 6 cut(s) 586, 709, 867, 915, 1417, 1454
Lsp1109I GCAGC 1 cut(s) 1476
LweI GCATC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 1478
MaeI CTAG 3 cut(s) 120, 252, 1485
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 401, 1338, 1380
MfeI CAATTG 1 cut(s) 1385
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 558
MlsI TGGCCA 1 cut(s) 1254
MluCI AATT 4 cut(s) 149, 274, 1180, 1385
MluNI TGGCCA 1 cut(s) 1254
MlyI GAGTC 4 cut(s) 245, 1180, 1298, 1388
Mox20I TGGCCA 1 cut(s) 1254
MroI TCCGGA 1 cut(s) 653
MroXI GAANNNNTTC 1 cut(s) 1239
MscI TGGCCA 1 cut(s) 1254
MslI CAYNNNNRTG 4 cut(s) 48, 54, 183, 1065
Msp20I TGGCCA 1 cut(s) 1254
MspA1I CMGCKG 3 cut(s) 78, 320, 1427
MspI CCGG 2 cut(s) 584, 654
MspR9I CCNGG 4 cut(s) 585, 1133, 1256, 1480
MunI CAATTG 1 cut(s) 1385
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 3 cut(s) 1133, 1256, 1480
MvnI CGCG 3 cut(s) 78, 399, 1113
MwoI GCNNNNNNNGC 3 cut(s) 1342, 1402, 1417
NciI CCSGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 436
NlaIII CATG 7 cut(s) 53, 182, 416, 515, 955, 1064, 1210
NlaIV GGNNCC 2 cut(s) 582, 962
NmeAIII GCCGAG 1 cut(s) 989
NmuCI GTSAC 3 cut(s) 401, 1338, 1380
NspI RCATGY 1 cut(s) 1210
NspV TTCGAA 1 cut(s) 494
PagI TCATGA 2 cut(s) 511, 1060
PaqCI CACCTGC 1 cut(s) 54
PciI ACATGT 1 cut(s) 1206
PciSI GCTCTTC 2 cut(s) 477, 849
PctI GAATGC 1 cut(s) 1239
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 3 cut(s) 125, 738, 1278
PflFI GACNNNGTC 2 cut(s) 596, 926
PkrI GCNGC 1 cut(s) 1466
PleI GAGTC 4 cut(s) 244, 1179, 1297, 1387
PpsI GAGTC 4 cut(s) 244, 1179, 1297, 1387
PpuMI RGGWCCY 1 cut(s) 1436
PscI ACATGT 1 cut(s) 1206
Psp5II RGGWCCY 1 cut(s) 1436
Psp6I CCWGG 3 cut(s) 1131, 1254, 1478
PspGI CCWGG 3 cut(s) 1131, 1254, 1478
PspN4I GGNNCC 2 cut(s) 582, 962
PspPI GGNCC 2 cut(s) 961, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PstI CTGCAG 1 cut(s) 1444
PstNI CAGNNNCTG 2 cut(s) 1414, 1470
PsuI RGATCY 1 cut(s) 455
PsyI GACNNNGTC 2 cut(s) 596, 926
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 362, 1167
RsaNI GTAC 2 cut(s) 361, 1166
RseI CAYNNNNRTG 4 cut(s) 48, 54, 183, 1065
SacII CCGCGG 1 cut(s) 79
SapI GCTCTTC 2 cut(s) 477, 849
SatI GCNGC 1 cut(s) 1465
Sau96I GGNCC 2 cut(s) 961, 1436
SchI GAGTC 4 cut(s) 245, 1180, 1298, 1388
ScrFI CCNGG 4 cut(s) 585, 1133, 1256, 1480
SduI GDGCHC 1 cut(s) 558
SexAI ACCWGGT 1 cut(s) 1478
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 1440
Sfr303I CCGCGG 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 79
SinI GGWCC 1 cut(s) 1436
SmiMI CAYNNNNRTG 4 cut(s) 48, 54, 183, 1065
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 4 cut(s) 149, 274, 1180, 1385
SsiI CCGC 5 cut(s) 76, 78, 399, 466, 1427
SspI AATATT 1 cut(s) 634
SspMI CTAG 3 cut(s) 120, 252, 1485
StyD4I CCNGG 4 cut(s) 583, 1131, 1254, 1478
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 37, 297, 596
TaiI ACGT 1 cut(s) 508
TaqI TCGA 7 cut(s) 494, 600, 670, 1030, 1102, 1191, 1447
TaqII GACCGA 1 cut(s) 1002
TasI AATT 4 cut(s) 149, 274, 1180, 1385
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 3 cut(s) 125, 738, 1278
TscAI CASTG 2 cut(s) 166, 601
TseFI GTSAC 3 cut(s) 401, 1338, 1380
TseI GCWGC 1 cut(s) 1464
Tsp45I GTSAC 3 cut(s) 401, 1338, 1380
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 2 cut(s) 166, 601
Tth111I GACNNNGTC 2 cut(s) 596, 926
VneI GTGCAC 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 1436
XagI CCTNNNNNAGG 1 cut(s) 252
XbaI TCTAGA 2 cut(s) 251, 1484
XceI RCATGY 1 cut(s) 1210
XmiI GTMKAC 1 cut(s) 1363
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 3 cut(s) 120, 252, 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.