pycom16g05510

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0023902
Physical Location & Seq
Forward (+)
3548501 .. 3548812
312 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGAAGAAGTTTGATTGGGACCATCCCATTCATCTTCAACCTCAGAGCCCCACTACTGTGAAGCAAGTTGGTGTAGTCTGGGATGCTTATGCGGCAACAAAGGATGCTCATGGAATCTGCATCCTGACCGAGTGGGACGAGTTCAAGAGTCTTGATTACCAGAAGATTAATGATCAGATGCAGAAGCCTGCATTTGTATTCGATGGAAGGAACGTGGTGGATGCTGAGAAGCTGAGGCAAATTGGGTTCATTGTTTACTCCATCGGAAAGCCCCTGGACGAGTGGCTCAAGGACATGCCCGCCGTGGCGTAA

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

5.48

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_C PF03720 21 - 74 1.3e-13 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01010
pyrus_communis pycom07g00980 pycom16g05510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 300
AgsI TTSAA 2 cut(s) 38, 145
AjnI CCWGG 1 cut(s) 273
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AseI ATTAAT 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 233
BccI CCATC 3 cut(s) 30, 197, 269
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 172
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 5 cut(s) 73, 94, 129, 168, 211
Bpu10I CCTNAGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 273, 303
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 273, 303
BseGI GGATG 5 cut(s) 22, 88, 109, 120, 226
BseMII CTCAG 3 cut(s) 56, 216, 224
BslFI GGGAC 2 cut(s) 32, 149
BsmFI GGGAC 2 cut(s) 32, 149
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 92, 300
BspCNI CTCAG 3 cut(s) 55, 217, 225
BspLI GGNNCC 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 273, 303
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 189, 300
BstDEI CTNAG 3 cut(s) 42, 225, 233
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 5 cut(s) 22, 88, 109, 120, 226
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 5 cut(s) 22, 88, 109, 120, 226
Cac8I GCNNGC 2 cut(s) 189, 300
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 2 cut(s) 110, 295
CviJI RGCY 5 cut(s) 48, 187, 232, 271, 286
CviKI_1 RGCY 5 cut(s) 48, 187, 232, 271, 286
DdeI CTNAG 3 cut(s) 42, 225, 233
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 2 cut(s) 113, 298
FaiI YATR 3 cut(s) 90, 111, 296
FaqI GGGAC 2 cut(s) 32, 149
FatI CATG 2 cut(s) 109, 294
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 5 cut(s) 9, 95, 107, 116, 233
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 113, 298
HinfI GANTC 2 cut(s) 114, 148
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 45, 177, 266
Hpy188III TCNNGA 3 cut(s) 124, 145, 152
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 120, 181, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 42, 225, 233
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 113, 298
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 64, 137, 173, 201, 260, 287
LweI GCATC 5 cut(s) 73, 94, 129, 168, 211
MaeII ACGT 1 cut(s) 213
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 16, 26, 175
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 2 cut(s) 51, 228
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 113, 298
NlaIV GGNNCC 1 cut(s) 20
NspI RCATGY 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 43, 216, 234
SfaNI GCATC 5 cut(s) 73, 94, 129, 168, 211
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 240
SsiI CCGC 2 cut(s) 92, 300
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 201
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 240
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 17, 20, 238
VpaK11BI GGWCC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 168
XceI RCATGY 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.