pycom16g09510

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0029473
Physical Location & Seq
Reverse (-)
6361456 .. 6362469
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09510.2

Sequence Viewer

Length: 435 bp
ATGGCGATGAGGTTTAGCGGCCTACACAAAGCCAATGCCAGAATCCAAGCATACCCTTTTGGCCACACGCACAAAAGAGCCTTATCAGACTCTAAGATCTTCAACAATGGCGACGATTTGGTGCTTCCCGTTCTGATCGTCGGTGCAGGGCCTGTGGGTCTCGTTCCGTCCCTACTTCTAACAAAACTAGGGGTCAAATGTTCGGTTGTGGAGAAGAGCAAAGCTTTCTCAAATCATCCACGGGCGCATTTCATCAACAATCGATCCATGGAGGTGTTTCGCAAATTGGATGGCCTGGCAGAGGAGATCCAGAGGCCTCAACCACCAGTAGAATTATGGAGAAAGTTCTTATATTGTACTTCCCTCGAACTGATGTCAGGCCTACCAAGACTCGGTGAATGTCCATGGATAGGTGCTGCCCCTTGCATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

9.55

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029473)

Species Orthologous Gene IDs
pyrus_communis pycom16g09510
rosa_multiflora Rmu_sc0004881.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AclWI GGATC 2 cut(s) 258, 301
AcoI YGGCCR 1 cut(s) 61
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 3 cut(s) 301, 392, 410
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 258, 301
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 6 cut(s) 19, 61, 149, 292, 314, 379
ApeKI GCWGC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 407
BalI TGGCCA 1 cut(s) 63
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 188
BglII AGATCT 1 cut(s) 96
BisI GCNGC 2 cut(s) 19, 417
BlsI GCNGC 2 cut(s) 20, 418
Bme1390I CCNGG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 239, 267, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 392, 410
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 239, 267, 404
BseGI GGATG 2 cut(s) 235, 295
BseLI CCNNNNNNNGG 3 cut(s) 301, 392, 410
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BshVI ATCGAT 1 cut(s) 262
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 301, 392, 410
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 96, 135, 263, 306
Bsp19I CCATGG 2 cut(s) 267, 404
BspACI CCGC 1 cut(s) 18
BspANI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BspDI ATCGAT 1 cut(s) 262
BspPI GGATC 2 cut(s) 258, 301
BspQI GCTCTTC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 239, 267, 404
BssMI GATC 4 cut(s) 96, 135, 263, 306
BssT1I CCWWGG 2 cut(s) 267, 404
Bst2UI CCWGG 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 3 cut(s) 239, 267, 404
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 235, 295
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 4 cut(s) 99, 138, 266, 309
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 96, 135, 263, 306
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 2 cut(s) 96, 306
BstYI RGATCY 2 cut(s) 96, 306
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 3 cut(s) 239, 267, 404
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 235, 295
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 268, 405
CviJI RGCY 9 cut(s) 21, 32, 63, 80, 151, 224, 294, 316, 381
CviKI_1 RGCY 9 cut(s) 21, 32, 63, 80, 151, 224, 294, 316, 381
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 1 cut(s) 93
DpnI GATC 4 cut(s) 98, 137, 265, 308
DpnII GATC 4 cut(s) 96, 135, 263, 306
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 267, 404
Eco147I AGGCCT 2 cut(s) 316, 381
Eco31I GGTCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 267, 404
ErhI CCWWGG 2 cut(s) 267, 404
FaeI CATG 2 cut(s) 271, 408
FaiI YATR 6 cut(s) 52, 269, 337, 352, 406, 428
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 267, 404
Fnu4HI GCNGC 2 cut(s) 19, 417
FokI GGATG 2 cut(s) 222, 302
Fsp4HI GCNGC 2 cut(s) 19, 417
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 19, 417
HaeIII GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 271, 408
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 3 cut(s) 42, 89, 390
HphI GGTGA 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 88, 135
Hpy188III TCNNGA 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 116, 143
HpyCH4V TGCA 2 cut(s) 146, 426
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 271, 408
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 96, 135, 263, 306
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 52, 132, 165, 281, 308, 323, 339, 363
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 1 cut(s) 188
MalI GATC 4 cut(s) 98, 137, 265, 308
MboI GATC 4 cut(s) 96, 135, 263, 306
MboII GAAGA 2 cut(s) 91, 226
MflI RGATCY 2 cut(s) 96, 306
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 2 cut(s) 284, 332
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 2 cut(s) 83, 384
MnlI CCTC 6 cut(s) 3, 265, 295, 306, 327, 374
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
NcoI CCATGG 2 cut(s) 267, 404
NdeII GATC 4 cut(s) 96, 135, 263, 306
NlaIII CATG 2 cut(s) 271, 408
PceI AGGCCT 2 cut(s) 316, 381
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 20, 418
PleI GAGTC 2 cut(s) 83, 384
PpsI GAGTC 2 cut(s) 83, 384
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 96, 306
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 2 cut(s) 19, 417
Sau3AI GATC 4 cut(s) 96, 135, 263, 306
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 83, 384
ScrFI CCNGG 1 cut(s) 296
SetI ASST 4 cut(s) 14, 226, 276, 415
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 2 cut(s) 284, 332
SseBI AGGCCT 2 cut(s) 316, 381
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 188
StuI AGGCCT 2 cut(s) 316, 381
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 267, 404
TaqI TCGA 2 cut(s) 262, 366
TasI AATT 2 cut(s) 284, 332
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseI GCWGC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.