Rmu_sc0004881.1_g000011

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004881.1
OG0029473
Physical Location & Seq
Reverse (-)
38469 .. 41549
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004881.1_g000011.1.cds

Sequence Viewer

Length: 939 bp
atggttgtgttggaagggggtgtgcaaggagaagagctgcaaagtggaggtagtttctactttgctttgtgtgtgatttggataatcgagacaaaaggttctatggcgttttcacggttgttcaagaggtttagcggcctgtacaaactcaatgccagaatccaaccatacccatctgcctacatccctacaagagccctatcacactctaagcttttcagcaatggcgacaattctgtgctttcggttttgatagtgggtgcaggacctgtgggtctcgttctttctatactcctaacaaagctaggggtcaaatgcgcagttttggagaaaagtacaagtttctccagacatccacaggcacacttcattaacaatcggtcgatggagatatttcgcaaattggatggcctggcagaggagatccagaggtctcaaccaccggtagatttgtggagaaagtttatatattgcacttcgctttctggttccattctcggctcagcaactatttctacactggatcttatatctggagacaaaattgagtttctccttattatagcaccgatagagccatcctaccatcttgctcatgctgcattgaaggtggctgaggaattcaaagtttctgcaagggtgtgtgtgttgtggcctgctggtagtgctaaaggagtggaggtaggaagtaaggtatcattgaaaccgcgggacaattacatggacgttatggaagttaaaaagtcatcaaatgcttcgtcatggtgggacatctgtcaaatgactgataaaggagccatcctagtacggcctgatgagcatgttgcttggcgtctaaagtctggagttgttggggaccctatgagggaaatgagaagggccttttctgctgccctaggcttgaagtctcatattaaagaccgagaagctgatcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

312

Amino Acids

34.38

Weight (kDa)

9.21

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029473)

Species Orthologous Gene IDs
pyrus_communis pycom16g09510
rosa_multiflora Rmu_sc0004881.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 319
AccII CGCG 1 cut(s) 709
AciI CCGC 3 cut(s) 135, 707, 709
AclWI GGATC 2 cut(s) 418, 531
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 832
AfaI GTAC 3 cut(s) 143, 337, 807
AfiI CCNNNNNNNGG 2 cut(s) 418, 865
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 5 cut(s) 124, 607, 625, 703, 904
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 4 cut(s) 37, 214, 304, 929
AluI AGCT 4 cut(s) 37, 214, 304, 929
Alw26I GTCTC 5 cut(s) 83, 281, 438, 531, 912
AlwI GGATC 2 cut(s) 418, 531
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 5 cut(s) 136, 409, 653, 809, 879
ApeKI GCWGC 3 cut(s) 37, 599, 890
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AsiGI ACCGGT 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 895
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 266, 856, 879
AvaII GGWCC 2 cut(s) 266, 856
AvrII CCTAGG 1 cut(s) 895
BanII GRGCYC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 24, 586, 877
BccI CCATC 6 cut(s) 181, 379, 401, 586, 594, 806
BceAI ACGGC 1 cut(s) 824
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 5 cut(s) 83, 281, 438, 531, 912
BfaI CTAG 3 cut(s) 305, 803, 896
BisI GCNGC 4 cut(s) 38, 136, 600, 891
BlnI CCTAGG 1 cut(s) 895
BlpI GCTNAGC 1 cut(s) 502
BlsI GCNGC 4 cut(s) 39, 137, 601, 892
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 2 cut(s) 266, 856
BmgT120I GGNCC 3 cut(s) 266, 856, 879
BmiI GGNNCC 4 cut(s) 490, 796, 857, 858
BmrFI CCNGG 1 cut(s) 413
BoxI GACNNNNGTC 1 cut(s) 774
BpmI CTGGAG 3 cut(s) 331, 555, 864
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 502
BsaHI GRCGYC 1 cut(s) 832
BsaI GGTCTC 2 cut(s) 281, 438
BsaJI CCNNGG 2 cut(s) 707, 895
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 865
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 707, 895
BseGI GGATG 5 cut(s) 183, 352, 412, 578, 798
BseLI CCNNNNNNNGG 2 cut(s) 418, 865
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 516, 606
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 3 cut(s) 24, 586, 877
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 5 cut(s) 138, 411, 655, 811, 881
BshTI ACCGGT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 383
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 3 cut(s) 725, 782, 869
BslI CCNNNNNNNGG 2 cut(s) 418, 865
BsmAI GTCTC 5 cut(s) 83, 281, 438, 531, 912
BsmFI GGGAC 3 cut(s) 725, 782, 869
BsnI GGCC 5 cut(s) 138, 411, 655, 811, 881
Bso31I GGTCTC 2 cut(s) 281, 438
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 3 cut(s) 423, 523, 931
Bsp1720I GCTNAGC 1 cut(s) 502
BspACI CCGC 3 cut(s) 135, 707, 709
BspANI GGCC 5 cut(s) 138, 411, 655, 811, 881
BspCNI CTCAG 2 cut(s) 515, 607
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 490, 796, 857, 858
BspPI GGATC 2 cut(s) 418, 531
BspQI GCTCTTC 1 cut(s) 27
BspTNI GGTCTC 2 cut(s) 281, 438
BsrDI GCAATG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 707, 895
BssMI GATC 3 cut(s) 423, 523, 931
BssNI GRCGYC 1 cut(s) 832
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 832
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 3 cut(s) 210, 502, 615
BstDSI CCRYGG 1 cut(s) 707
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 5 cut(s) 183, 352, 412, 578, 798
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 3 cut(s) 426, 526, 934
BstMAI GTCTC 5 cut(s) 83, 281, 438, 531, 912
BstMBI GATC 3 cut(s) 423, 523, 931
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 4 cut(s) 599, 665, 817, 887
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 824
BstPAI GACNNNNGTC 1 cut(s) 774
BstSCI CCNGG 1 cut(s) 411
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 3 cut(s) 24, 586, 877
BstX2I RGATCY 2 cut(s) 423, 523
BstYI RGATCY 2 cut(s) 423, 523
BsuRI GGCC 5 cut(s) 138, 411, 655, 811, 881
BtgI CCRYGG 1 cut(s) 707
BtsCI GGATG 5 cut(s) 183, 352, 412, 578, 798
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 657
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 266, 856, 879
Cfr42I CCGCGG 1 cut(s) 710
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 142, 336, 806
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 4 cut(s) 596, 721, 762, 821
CviQI GTAC 3 cut(s) 142, 336, 806
DdeI CTNAG 3 cut(s) 210, 502, 615
DpnI GATC 3 cut(s) 425, 525, 933
DpnII GATC 3 cut(s) 423, 523, 931
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 2 cut(s) 281, 438
Eco47I GGWCC 2 cut(s) 266, 856
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 3 cut(s) 266, 856, 879
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 4 cut(s) 599, 724, 765, 824
FaqI GGGAC 3 cut(s) 725, 782, 869
FatI CATG 4 cut(s) 595, 720, 761, 820
FauI CCCGC 1 cut(s) 702
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 38, 136, 600, 891
FokI GGATG 5 cut(s) 170, 339, 419, 565, 785
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 4 cut(s) 38, 136, 600, 891
FspBI CTAG 3 cut(s) 305, 803, 896
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 1 cut(s) 319
GluI GCNGC 4 cut(s) 38, 136, 600, 891
GsuI CTGGAG 3 cut(s) 331, 555, 864
HaeIII GGCC 5 cut(s) 138, 411, 655, 811, 881
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 832
Hin1II CATG 4 cut(s) 599, 724, 765, 824
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 443
Hpy188III TCNNGA 6 cut(s) 88, 124, 348, 427, 534, 843
HpyAV CCTTC 3 cut(s) 8, 601, 870
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 6 cut(s) 25, 40, 263, 474, 602, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 599, 665, 817, 887
HpyF3I CTNAG 3 cut(s) 210, 502, 615
HpySE526I ACGT 1 cut(s) 726
Hsp92I GRCGYC 1 cut(s) 832
Hsp92II CATG 4 cut(s) 599, 724, 765, 824
HspAI GCGC 1 cut(s) 318
KflI GGGWCCC 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 931
KspI CCGCGG 1 cut(s) 710
Kzo9I GATC 3 cut(s) 423, 523, 931
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 3 cut(s) 24, 586, 877
MaeI CTAG 3 cut(s) 305, 803, 896
MaeII ACGT 1 cut(s) 726
MalI GATC 3 cut(s) 425, 525, 933
MboI GATC 3 cut(s) 423, 523, 931
MboII GAAGA 1 cut(s) 44
MflI RGATCY 2 cut(s) 423, 523
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 5 cut(s) 232, 401, 543, 620, 715
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 7 cut(s) 41, 120, 412, 423, 610, 673, 858
MseI TTAA 3 cut(s) 372, 738, 915
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 4 cut(s) 599, 665, 817, 887
NdeII GATC 3 cut(s) 423, 523, 931
NlaIII CATG 4 cut(s) 599, 724, 765, 824
NlaIV GGNNCC 4 cut(s) 490, 796, 857, 858
NmeAIII GCCGAG 1 cut(s) 477
NsbI TGCGCA 1 cut(s) 319
NspI RCATGY 1 cut(s) 824
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 4 cut(s) 39, 137, 601, 892
PpuMI RGGWCCY 2 cut(s) 266, 856
PshAI GACNNNNGTC 1 cut(s) 774
Psp5II RGGWCCY 2 cut(s) 266, 856
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 4 cut(s) 490, 796, 857, 858
PspPI GGNCC 3 cut(s) 266, 856, 879
PspPPI RGGWCCY 2 cut(s) 266, 856
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 423, 523
RsaI GTAC 3 cut(s) 143, 337, 807
RsaNI GTAC 3 cut(s) 142, 336, 806
SacII CCGCGG 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 372, 738, 915
SatI GCNGC 4 cut(s) 38, 136, 600, 891
Sau3AI GATC 3 cut(s) 423, 523, 931
Sau96I GGNCC 3 cut(s) 266, 856, 879
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 199
Sfr303I CCGCGG 1 cut(s) 710
SgrBI CCGCGG 1 cut(s) 710
SinI GGWCC 2 cut(s) 266, 856
Sse9I AATT 5 cut(s) 232, 401, 543, 620, 715
SsiI CCGC 3 cut(s) 135, 707, 709
SspMI CTAG 3 cut(s) 305, 803, 896
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 1 cut(s) 729
TaqI TCGA 2 cut(s) 87, 383
TaqII GACCGA 2 cut(s) 369, 936
TasI AATT 5 cut(s) 232, 401, 543, 620, 715
TatI WGTACW 2 cut(s) 141, 335
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 3 cut(s) 372, 738, 915
Tru9I TTAA 3 cut(s) 372, 738, 915
TscAI CASTG 1 cut(s) 525
TseI GCWGC 3 cut(s) 37, 599, 890
TspDTI ATGAA 1 cut(s) 358
TspRI CASTG 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 266, 856
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 824
XmaJI CCTAGG 1 cut(s) 895
XspI CTAG 3 cut(s) 305, 803, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.