pycom16g09510

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0029473
Physical Location & Seq
Reverse (-)
6361456 .. 6362469
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGCGATGAGGTTTAGCGGCCTACACAAAGCCAATGCCAGAATCCAAGCATACCCTTTTGGCCACACGCACAAAAGAGCCTTATCAGACTCTAAGATCTTCAACAATGGCGACGATTTGGTGCTTCCCGTTCTGATCGTCGGTGCAGGGCCTGTGGGTCTCGTTCCGTCCCTACTTCTAACAAAACTAGGGGTCAAATGTTCGGTTGTGGAGAAGAGCAAAGCTTTCTCAAATCATCCACGGGCGCATTTCATCAACAATCGATCCATGGAGGTGTTTCGCAAATTGGATGGCCTGGCAGAGGAGATCCAGAGGCCTCAACCACCAGTAGAATTATGGAGAAAGTTCTTATATTGTACTTCCCTCGAACTGATGTCAGGCCTACCAAGACTCGGTGAATGTCCATGGATAGGTGCTGCCCCTTGCATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

9.55

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 43 - 120 2.4e-19 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029473)

Species Orthologous Gene IDs
pyrus_communis pycom16g09510
rosa_multiflora Rmu_sc0004881.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AclWI GGATC 2 cut(s) 258, 301
AcoI YGGCCR 1 cut(s) 61
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 3 cut(s) 301, 392, 410
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 258, 301
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 6 cut(s) 19, 61, 149, 292, 314, 379
ApeKI GCWGC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 407
BalI TGGCCA 1 cut(s) 63
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 188
BglII AGATCT 1 cut(s) 96
BisI GCNGC 2 cut(s) 19, 417
BlsI GCNGC 2 cut(s) 20, 418
Bme1390I CCNGG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 239, 267, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 392, 410
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 239, 267, 404
BseGI GGATG 2 cut(s) 235, 295
BseLI CCNNNNNNNGG 3 cut(s) 301, 392, 410
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BshVI ATCGAT 1 cut(s) 262
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 301, 392, 410
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 96, 135, 263, 306
Bsp19I CCATGG 2 cut(s) 267, 404
BspACI CCGC 1 cut(s) 18
BspANI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BspDI ATCGAT 1 cut(s) 262
BspPI GGATC 2 cut(s) 258, 301
BspQI GCTCTTC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 239, 267, 404
BssMI GATC 4 cut(s) 96, 135, 263, 306
BssT1I CCWWGG 2 cut(s) 267, 404
Bst2UI CCWGG 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 3 cut(s) 239, 267, 404
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 235, 295
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 4 cut(s) 99, 138, 266, 309
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 96, 135, 263, 306
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 2 cut(s) 96, 306
BstYI RGATCY 2 cut(s) 96, 306
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 3 cut(s) 239, 267, 404
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 235, 295
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 268, 405
CviJI RGCY 9 cut(s) 21, 32, 63, 80, 151, 224, 294, 316, 381
CviKI_1 RGCY 9 cut(s) 21, 32, 63, 80, 151, 224, 294, 316, 381
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 1 cut(s) 93
DpnI GATC 4 cut(s) 98, 137, 265, 308
DpnII GATC 4 cut(s) 96, 135, 263, 306
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 267, 404
Eco147I AGGCCT 2 cut(s) 316, 381
Eco31I GGTCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 267, 404
ErhI CCWWGG 2 cut(s) 267, 404
FaeI CATG 2 cut(s) 271, 408
FaiI YATR 6 cut(s) 52, 269, 337, 352, 406, 428
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 267, 404
Fnu4HI GCNGC 2 cut(s) 19, 417
FokI GGATG 2 cut(s) 222, 302
Fsp4HI GCNGC 2 cut(s) 19, 417
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 19, 417
HaeIII GGCC 6 cut(s) 21, 63, 151, 294, 316, 381
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 271, 408
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 3 cut(s) 42, 89, 390
HphI GGTGA 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 88, 135
Hpy188III TCNNGA 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 116, 143
HpyCH4V TGCA 2 cut(s) 146, 426
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 271, 408
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 96, 135, 263, 306
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 52, 132, 165, 281, 308, 323, 339, 363
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 1 cut(s) 188
MalI GATC 4 cut(s) 98, 137, 265, 308
MboI GATC 4 cut(s) 96, 135, 263, 306
MboII GAAGA 2 cut(s) 91, 226
MflI RGATCY 2 cut(s) 96, 306
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 2 cut(s) 284, 332
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 2 cut(s) 83, 384
MnlI CCTC 6 cut(s) 3, 265, 295, 306, 327, 374
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
NcoI CCATGG 2 cut(s) 267, 404
NdeII GATC 4 cut(s) 96, 135, 263, 306
NlaIII CATG 2 cut(s) 271, 408
PceI AGGCCT 2 cut(s) 316, 381
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 20, 418
PleI GAGTC 2 cut(s) 83, 384
PpsI GAGTC 2 cut(s) 83, 384
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 96, 306
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 2 cut(s) 19, 417
Sau3AI GATC 4 cut(s) 96, 135, 263, 306
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 83, 384
ScrFI CCNGG 1 cut(s) 296
SetI ASST 4 cut(s) 14, 226, 276, 415
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 2 cut(s) 284, 332
SseBI AGGCCT 2 cut(s) 316, 381
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 188
StuI AGGCCT 2 cut(s) 316, 381
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 267, 404
TaqI TCGA 2 cut(s) 262, 366
TasI AATT 2 cut(s) 284, 332
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseI GCWGC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.