pycom16g11640

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0022219
Physical Location & Seq
Forward (+)
8086504 .. 8088333
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGTCAAAGCAGGCTCCTAGTTCTGAAATTATTAATGCATATCCTTCGTGGATGCTCAGGATCACTTCAGGGTTTCCAGTTTGGAATATTCTCGCTGGAGTTTTACCAGTAGTTGCCCTGATTCTATTGGCAATCTTGCTGCGCAAGGCTATTACTGGAAGCTCTTCTGAGGGGATTTGGAAGTATATTGTCATAGGAACTAATATAAGTTATATACTAATAGCAGTGCATTGGGCTTCAGAAAGTAACATATTGAATCTGGACGAGGTGCTTAAAGGCAATGGAAGAAATAACCTTCCTCGACTGATATATGCCATTGGATTTGGACAGTTGTTTTTACTAGCATTTAATCAGTTTTTCAATAAGGGGAAATCCTCAGATTGCAGCAAAGTCTTATATATTAAAACAGTGGCCATGTTTTCTGCCTGGAGCTCAACAGTCATTCTTCTGTTGGGAAAGCAGGGGCCCTGGATTGCTTTAGCATTCCTTATTGGAGGTTATTGCATAATGAGGCTGGATAACATAGAACTGGATGCCAAAGATGGAGGCAGTTGGAATACGTCGCTTGATCCTGTCCCTGTAACTCAATGGAGCCTTTTTGCTGTGTGCCTGTTTTTCTGCACTGGTCATTGGTGTGCTTTTGATGGCCTCCGATACGGTGCTGCATTTATTGGGTTCGATGAGTTCGTCCTAGGTCCCCAAGCAATCCTCCTTACAATGGACACATTTGGTTTTTCTCTCATCCTTCCAATATTTGGACTTCCATTTCTTGTTGCACGCCTGGGTCAGACCGAGAAAGGAAAGAAATTCATGCTCACGCGATTATCTCTAGTGTATATGATTTATGGGGTCATCACGGCCACTTCGGTCACAGCCACTGTAATATGCGTTGCAATGCATAGGCGGCATCTAATGGTATGGGGTTTATTTGCTCCTAAGTTTGTTTTCGATGTGGCTGGTCTTATCCTCACGGACATACTCGTTTGTGTGGCGTCACATTACTATTTCAGTCAAGTAGAAGATGATGATGCTCTACAAGACCCGTTCAGCGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest

Protein Analysis

353

Amino Acids

38.96

Weight (kDa)

7.57

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21830 FvH4_4g21830
pyrus_communis pycom16g11640
rosa_multiflora Rmu_sc0035894.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 1 cut(s) 820
AciI CCGC 1 cut(s) 904
AclWI GGATC 2 cut(s) 68, 563
AcoI YGGCCR 2 cut(s) 411, 858
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 2 cut(s) 51, 222
AcyI GRCGYC 1 cut(s) 992
AfiI CCNNNNNNNGG 2 cut(s) 718, 755
AgsI TTSAA 2 cut(s) 256, 361
AjnI CCWGG 3 cut(s) 425, 467, 780
AluBI AGCT 2 cut(s) 162, 432
AluI AGCT 2 cut(s) 162, 432
Alw21I GWGCWC 1 cut(s) 434
AlwI GGATC 2 cut(s) 68, 563
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 4 cut(s) 411, 464, 646, 858
ApaI GGGCCC 1 cut(s) 468
ApeKI GCWGC 3 cut(s) 139, 384, 662
ApoI RAATTY 1 cut(s) 806
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 163
AspA2I CCTAGG 1 cut(s) 691
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 464, 465, 695
AvaII GGWCC 1 cut(s) 695
AvrII CCTAGG 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 413
BanII GRGCYC 2 cut(s) 434, 468
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 126, 396, 649
BccI CCATC 2 cut(s) 536, 638
BceAI ACGGC 1 cut(s) 873
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 3 cut(s) 427, 469, 782
BfaI CTAG 4 cut(s) 18, 341, 692, 830
BisI GCNGC 4 cut(s) 140, 385, 663, 905
BlnI CCTAGG 1 cut(s) 691
BlsI GCNGC 4 cut(s) 141, 386, 664, 906
Bme1390I CCNGG 3 cut(s) 427, 469, 782
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 3 cut(s) 464, 465, 695
BmiI GGNNCC 5 cut(s) 15, 465, 466, 593, 697
BmrFI CCNGG 3 cut(s) 427, 469, 782
BmsI GCATC 4 cut(s) 42, 523, 916, 1018
BpmI CTGGAG 2 cut(s) 117, 448
Bpu10I CCTNAGC 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 992
BsaJI CCNNGG 3 cut(s) 467, 691, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 718, 755
Bse1I ACTGG 5 cut(s) 77, 107, 160, 534, 628
Bse3DI GCAATG 2 cut(s) 286, 900
BseBI CCWGG 3 cut(s) 427, 469, 782
BseDI CCNNGG 3 cut(s) 467, 691, 781
BseGI GGATG 3 cut(s) 57, 538, 741
BseLI CCNNNNNNNGG 2 cut(s) 718, 755
BseMI GCAATG 2 cut(s) 286, 900
BseMII CTCAG 3 cut(s) 70, 159, 390
BseNI ACTGG 5 cut(s) 77, 107, 160, 534, 628
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 3 cut(s) 126, 396, 649
BsgI GTGCAG 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 820
BshFI GGCC 4 cut(s) 413, 466, 648, 860
BsiHKAI GWGCWC 1 cut(s) 434
BslFI GGGAC 2 cut(s) 560, 681
BslI CCNNNNNNNGG 2 cut(s) 718, 755
BsmFI GGGAC 2 cut(s) 560, 681
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 4 cut(s) 413, 466, 648, 860
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 434, 468
Bsp143I GATC 2 cut(s) 60, 568
BspACI CCGC 1 cut(s) 904
BspANI GGCC 4 cut(s) 413, 466, 648, 860
BspCNI CTCAG 3 cut(s) 69, 160, 389
BspFNI CGCG 1 cut(s) 820
BspLI GGNNCC 5 cut(s) 15, 465, 466, 593, 697
BspPI GGATC 2 cut(s) 68, 563
BspQI GCTCTTC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 286, 900
BsrI ACTGG 5 cut(s) 77, 107, 160, 534, 628
BssECI CCNNGG 3 cut(s) 467, 691, 781
BssMI GATC 2 cut(s) 60, 568
BssNI GRCGYC 1 cut(s) 992
BssT1I CCWWGG 1 cut(s) 691
Bst2UI CCWGG 3 cut(s) 427, 469, 782
Bst4CI ACNGT 5 cut(s) 330, 409, 439, 659, 880
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 992
BstC8I GCNNGC 2 cut(s) 12, 778
BstDEI CTNAG 4 cut(s) 56, 168, 376, 936
BstF5I GGATG 3 cut(s) 57, 538, 741
BstFNI CGCG 1 cut(s) 820
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 63, 571
BstMBI GATC 2 cut(s) 60, 568
BstMWI GCNNNNNNNGC 1 cut(s) 904
BstNI CCWGG 3 cut(s) 427, 469, 782
BstSCI CCNGG 3 cut(s) 425, 467, 780
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 1 cut(s) 820
BstV1I GCAGC 3 cut(s) 126, 396, 649
BsuRI GGCC 4 cut(s) 413, 466, 648, 860
BtsCI GGATG 3 cut(s) 57, 538, 741
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 231, 414, 621, 876
Cac8I GCNNGC 2 cut(s) 12, 778
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 464, 465, 695
CseI GACGC 1 cut(s) 981
CviAII CATG 2 cut(s) 415, 811
DdeI CTNAG 4 cut(s) 56, 168, 376, 936
DpnI GATC 2 cut(s) 62, 570
DpnII GATC 2 cut(s) 60, 568
EaeI YGGCCR 2 cut(s) 411, 858
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 434, 468
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 2 cut(s) 51, 222
EcoICRI GAGCTC 1 cut(s) 432
EcoO109I RGGNCCY 3 cut(s) 464, 465, 695
EcoRII CCWGG 3 cut(s) 425, 467, 780
EcoT14I CCWWGG 1 cut(s) 691
EcoT22I ATGCAT 2 cut(s) 40, 900
EcoT38I GRGCYC 2 cut(s) 434, 468
ErhI CCWWGG 1 cut(s) 691
FaeI CATG 2 cut(s) 418, 814
FaqI GGGAC 2 cut(s) 560, 681
FatI CATG 2 cut(s) 414, 810
Fnu4HI GCNGC 4 cut(s) 140, 385, 663, 905
FokI GGATG 3 cut(s) 64, 545, 728
FriOI GRGCYC 2 cut(s) 434, 468
Fsp4HI GCNGC 4 cut(s) 140, 385, 663, 905
FspBI CTAG 4 cut(s) 18, 341, 692, 830
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GluI GCNGC 4 cut(s) 140, 385, 663, 905
GsuI CTGGAG 2 cut(s) 117, 448
HaeIII GGCC 4 cut(s) 413, 466, 648, 860
HgaI GACGC 1 cut(s) 981
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 992
Hin1II CATG 2 cut(s) 418, 814
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 121, 256
Hpy188I TCNGA 6 cut(s) 25, 169, 241, 379, 653, 789
Hpy188III TCNNGA 2 cut(s) 58, 260
Hpy99I CGWCG 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 54, 305, 755
HpyCH4III ACNGT 5 cut(s) 330, 409, 439, 659, 880
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 9 cut(s) 38, 229, 384, 504, 621, 665, 776, 893, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 904
HpyF3I CTNAG 4 cut(s) 56, 168, 376, 936
HpySE526I ACGT 1 cut(s) 560
Hsp92I GRCGYC 1 cut(s) 992
Hsp92II CATG 2 cut(s) 418, 814
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 60, 568
LguI GCTCTTC 1 cut(s) 169
LmnI GCTCC 4 cut(s) 19, 429, 591, 937
Lsp1109I GCAGC 3 cut(s) 126, 396, 649
LweI GCATC 4 cut(s) 42, 523, 916, 1018
MaeI CTAG 4 cut(s) 18, 341, 692, 830
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 4 cut(s) 245, 580, 868, 993
MalI GATC 2 cut(s) 62, 570
MboI GATC 2 cut(s) 60, 568
MboII GAAGA 4 cut(s) 156, 297, 437, 1031
MhlI GDGCHC 2 cut(s) 434, 468
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 2 cut(s) 27, 806
MluNI TGGCCA 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 533
Mox20I TGGCCA 1 cut(s) 413
Mph1103I ATGCAT 2 cut(s) 40, 900
MroXI GAANNNNTTC 1 cut(s) 163
MscI TGGCCA 1 cut(s) 413
MseI TTAA 4 cut(s) 33, 273, 348, 402
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 413
MspR9I CCNGG 3 cut(s) 427, 469, 782
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 3 cut(s) 427, 469, 782
MvnI CGCG 1 cut(s) 820
MwoI GCNNNNNNNGC 1 cut(s) 904
NdeII GATC 2 cut(s) 60, 568
NlaIII CATG 2 cut(s) 418, 814
NlaIV GGNNCC 5 cut(s) 15, 465, 466, 593, 697
NmuCI GTSAC 2 cut(s) 868, 993
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 2 cut(s) 40, 900
PciSI GCTCTTC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 121, 256
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 4 cut(s) 141, 386, 664, 906
PpuMI RGGWCCY 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 3 cut(s) 425, 467, 780
PspGI CCWGG 3 cut(s) 425, 467, 780
PspN4I GGNNCC 5 cut(s) 15, 465, 466, 593, 697
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 3 cut(s) 464, 465, 695
PspPPI RGGWCCY 1 cut(s) 695
PstNI CAGNNNCTG 1 cut(s) 878
RseI CAYNNNNRTG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 169
SaqAI TTAA 4 cut(s) 33, 273, 348, 402
SatI GCNGC 4 cut(s) 140, 385, 663, 905
Sau3AI GATC 2 cut(s) 60, 568
Sau96I GGNCC 3 cut(s) 464, 465, 695
ScrFI CCNGG 3 cut(s) 427, 469, 782
SduI GDGCHC 2 cut(s) 434, 468
SetI ASST 7 cut(s) 164, 270, 297, 434, 499, 563, 697
SfaNI GCATC 4 cut(s) 42, 523, 916, 1018
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 633
Sse9I AATT 2 cut(s) 27, 806
SsiI CCGC 1 cut(s) 904
SspI AATATT 2 cut(s) 88, 753
SspMI CTAG 4 cut(s) 18, 341, 692, 830
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 425, 467, 780
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 5 cut(s) 330, 409, 439, 659, 880
TaiI ACGT 1 cut(s) 563
TaqI TCGA 3 cut(s) 301, 678, 948
TaqII GACCGA 2 cut(s) 806, 856
TasI AATT 2 cut(s) 27, 806
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 2 cut(s) 121, 256
Tru1I TTAA 4 cut(s) 33, 273, 348, 402
Tru9I TTAA 4 cut(s) 33, 273, 348, 402
TscAI CASTG 4 cut(s) 231, 414, 628, 883
TseFI GTSAC 2 cut(s) 868, 993
TseI GCWGC 3 cut(s) 139, 384, 662
Tsp45I GTSAC 2 cut(s) 868, 993
TspDTI ATGAA 1 cut(s) 799
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 4 cut(s) 231, 414, 628, 883
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 695
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 1 cut(s) 806
XmaJI CCTAGG 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 4 cut(s) 18, 341, 692, 830
Zsp2I ATGCAT 2 cut(s) 40, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.