Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035894.1

Orthogroup ID

OG0022219

Physical Location & Seq

Genomic Coordinates Reverse (-)

530 .. 2030

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035894.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgttttctgtatggagttcaacagtcattattctgctaggaaaacaaggacccttcattgcgttagtattcataattggaggttattgcataatgcggctggataatgtagaactggatggcaaagatggaggtagttggaatttgatgcttgatccagttcctgtaacacaatggagcctttttgctgtgtgcctgtttttctgcactggccactggtgtgcttttgatggcctccgatatggtgctgcatttacaggctttgatgagttcatcctggttccccaagcaatccttcttacaatggatacttatggtttttccctcatccttccaatacttggacttccatttcttgttgcatgccgggggcagaccgaaaaaggaaagcaacccattcttgggcgactatctctggtgtatatgatttatggactcatcgtggccacttcagtcacagccactatactatgtgttacaatccataggcggcatttgatggtatggggtttatttgctcccaagtttgtttttgatgtggcgggtcttatccttacagacagtttcatttgtttagcctcactttactatttcagtcgagtggaagatcatgccctatacgatccattaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Phosphodiest

Protein Analysis

211

Amino Acids

23.5

Weight (kDa)

6.03

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022219)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21830 FvH4_4g21830
pyrus_communis	pycom16g11640
rosa_multiflora	Rmu_sc0035894.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	3 cut(s)	97, 490, 542
AclWI	GGATC	2 cut(s)	149, 617
AcoI	YGGCCR	2 cut(s)	211, 444
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	341, 401, 402
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AleI	CACNNNNGTG	1 cut(s)	219
AlwI	GGATC	2 cut(s)	149, 617
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	211, 232, 444
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	2 cut(s)	213, 446
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	4 cut(s)	113, 122, 224, 493
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	98, 249, 491
BlsI	GCNGC	3 cut(s)	99, 250, 492
Bme1390I	CCNGG	2 cut(s)	278, 368
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	52, 179, 282
BmrFI	CCNGG	2 cut(s)	278, 368
BmsI	GCATC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 401, 402
Bse1I	ACTGG	4 cut(s)	120, 158, 214, 221
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	124, 273, 327
BseLI	CCNNNNNNNGG	3 cut(s)	341, 401, 402
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	4 cut(s)	120, 158, 214, 221
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	213, 234, 446
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	341, 401, 402
BsnI	GGCC	3 cut(s)	213, 234, 446
Bsp143I	GATC	3 cut(s)	154, 607, 622
BspACI	CCGC	3 cut(s)	97, 490, 542
BspANI	GGCC	3 cut(s)	213, 234, 446
BspLI	GGNNCC	3 cut(s)	52, 179, 282
BspPI	GGATC	2 cut(s)	149, 617
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	4 cut(s)	120, 158, 214, 221
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	154, 607, 622
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	25, 563
BstC8I	GCNNGC	1 cut(s)	364
BstF5I	GGATG	3 cut(s)	124, 273, 327
BstKTI	GATC	3 cut(s)	157, 610, 625
BstMBI	GATC	3 cut(s)	154, 607, 622
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	276, 366
BstV1I	GCAGC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	213, 234, 446
BtsCI	GGATG	3 cut(s)	124, 273, 327
BtsIMutI	CAGTG	2 cut(s)	207, 214
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	2 cut(s)	363, 611
CviJI	RGCY	8 cut(s)	100, 180, 213, 234, 261, 446, 461, 578
CviKI_1	RGCY	8 cut(s)	100, 180, 213, 234, 261, 446, 461, 578
DpnI	GATC	3 cut(s)	156, 609, 624
DpnII	GATC	3 cut(s)	154, 607, 622
EaeI	YGGCCR	2 cut(s)	211, 444
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	366, 614
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	2 cut(s)	362, 610
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	98, 249, 491
FokI	GGATG	3 cut(s)	131, 260, 314
Fsp4HI	GCNGC	3 cut(s)	98, 249, 491
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	3 cut(s)	98, 249, 491
HaeIII	GGCC	3 cut(s)	213, 234, 446
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	2 cut(s)	366, 614
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	64, 305, 341
HpyCH4III	ACNGT	2 cut(s)	25, 563
HpyCH4V	TGCA	4 cut(s)	90, 207, 251, 362
Hsp92II	CATG	2 cut(s)	366, 614
Kzo9I	GATC	3 cut(s)	154, 607, 622
LmnI	GCTCC	2 cut(s)	177, 523
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	3 cut(s)	166, 454, 475
MalI	GATC	3 cut(s)	156, 609, 624
MboI	GATC	3 cut(s)	154, 607, 622
MboII	GAAGA	1 cut(s)	617
MlsI	TGGCCA	2 cut(s)	213, 446
MluCI	AATT	2 cut(s)	75, 142
MluNI	TGGCCA	2 cut(s)	213, 446
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	74, 125, 245, 335, 589
Mox20I	TGGCCA	2 cut(s)	213, 446
MscI	TGGCCA	2 cut(s)	213, 446
MseI	TTAA	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	2 cut(s)	213, 446
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	278, 368
MvaI	CCWGG	1 cut(s)	278
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	154, 607, 622
NlaIII	CATG	2 cut(s)	366, 614
NlaIV	GGNNCC	3 cut(s)	52, 179, 282
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	366
OliI	CACNNNNGTG	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	99, 250, 492
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	52, 179, 282
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	629
SatI	GCNGC	3 cut(s)	98, 249, 491
Sau3AI	GATC	3 cut(s)	154, 607, 622
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	278, 368
SetI	ASST	2 cut(s)	85, 136
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	2 cut(s)	75, 142
SsiI	CCGC	3 cut(s)	97, 490, 542
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	276, 366
TaaI	ACNGT	2 cut(s)	25, 563
TaqI	TCGA	1 cut(s)	598
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	2 cut(s)	75, 142
TauI	GCSGC	2 cut(s)	100, 493
Tru1I	TTAA	1 cut(s)	629
Tru9I	TTAA	1 cut(s)	629
TscAI	CASTG	2 cut(s)	214, 221
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	46, 61, 262, 556
TspRI	CASTG	2 cut(s)	214, 221
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.