Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024695

Physical Location & Seq

Genomic Coordinates Reverse (-)

8527896 .. 8528325

Gene Structure 430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTCATGGTTTTCGGAGAAATCACCACCAAGGCCAATGTGGACTACGAGAAGATCGTTCGTCACACATGCCGCACAATCGGTTTCGTATCAGACGATGTGGGTCTTGATGCAGACAACTGCAAGGTTCTTGTGAACATTGAGCAGCAGAGCCCTGACATTGCTCAAGGTGTCCATGGTCATTTCTCCAAGAGGCCTGAGGAAATTGGAGCTGGTGACCAAGGCCACATGTTTGGTTATGCCACTGATGAGACCCCCGAGCTCATGCCACTCACCCACGTCCTTGCAACCAAGCTCGGTGCCAAGCTCACTGAGGTTCGCAAGAACGGGACTTGTGCTTGGTTGAGGGTGCCATGGTCCCAATTCGTGTCCACACGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004478 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019438 GO:0019748 GO:0019752 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

128

Amino Acids

14.05

Weight (kDa)

5.91

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_N	PF00438	1 - 52	8.9e-13	S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M	PF02772	68 - 117	4.9e-19	S-adenosylmethionine synthetase, central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024695)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g20580 pycom16g12220
rosa_wichuraiana	Rw4G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	299, 349
AciI	CCGC	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	228
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	4 cut(s)	212, 262, 295, 307
AluI	AGCT	4 cut(s)	212, 262, 295, 307
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	33, 194, 223
ApeKI	GCWGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	357, 378
AsuHPI	GGTGA	3 cut(s)	16, 227, 265
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	357, 378
AxyI	CCTNAGG	1 cut(s)	198
BanI	GGYRCC	2 cut(s)	299, 349
BanII	GRGCYC	2 cut(s)	155, 264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	73, 146
BlsI	GCNGC	2 cut(s)	74, 147
Bme18I	GGWCC	2 cut(s)	357, 378
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	357, 378
BmiI	GGNNCC	3 cut(s)	301, 351, 359
BmsI	GCATC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	30, 175, 220, 353
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	4 cut(s)	30, 175, 220, 353
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	189, 303
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	3 cut(s)	35, 196, 225
BshNI	GGYRCC	2 cut(s)	299, 349
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	343, 343
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	343, 343
BsnI	GGCC	3 cut(s)	35, 196, 225
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	155, 264
Bsp143I	GATC	1 cut(s)	54
Bsp19I	CCATGG	2 cut(s)	175, 353
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	35, 196, 225
BspCNI	CTCAG	2 cut(s)	190, 304
BspLI	GGNNCC	3 cut(s)	301, 351, 359
BspT107I	GGYRCC	2 cut(s)	299, 349
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	30, 175, 220, 353
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	4 cut(s)	30, 175, 220, 353
Bst4CI	ACNGT	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	198, 312
BstDSI	CCRYGG	2 cut(s)	175, 353
BstEII	GGTNACC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	54
BstNSI	RCATGY	2 cut(s)	72, 232
BstPI	GGTNACC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	35, 196, 225
BtgI	CCRYGG	2 cut(s)	175, 353
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	243, 309
Cfr13I	GGNCC	2 cut(s)	357, 378
CviAII	CATG	6 cut(s)	7, 69, 176, 229, 265, 354
CviJI	RGCY	8 cut(s)	35, 153, 196, 212, 225, 262, 295, 307
CviKI_1	RGCY	8 cut(s)	35, 153, 196, 212, 225, 262, 295, 307
DdeI	CTNAG	2 cut(s)	198, 312
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	4 cut(s)	30, 175, 220, 353
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	155, 264
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	357, 378
Eco53kI	GAGCTC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	215
EcoT14I	CCWWGG	4 cut(s)	30, 175, 220, 353
EcoT38I	GRGCYC	2 cut(s)	155, 264
ErhI	CCWWGG	4 cut(s)	30, 175, 220, 353
FaeI	CATG	6 cut(s)	10, 72, 179, 232, 268, 357
FaiI	YATR	7 cut(s)	8, 70, 177, 230, 240, 266, 355
FaqI	GGGAC	2 cut(s)	343, 343
FatI	CATG	6 cut(s)	6, 68, 175, 228, 264, 353
Fnu4HI	GCNGC	2 cut(s)	73, 146
FriOI	GRGCYC	2 cut(s)	155, 264
Fsp4HI	GCNGC	2 cut(s)	73, 146
GluI	GCNGC	2 cut(s)	73, 146
HaeIII	GGCC	3 cut(s)	35, 196, 225
Hin1II	CATG	6 cut(s)	10, 72, 179, 232, 268, 357
HphI	GGTGA	3 cut(s)	16, 227, 265
Hpy166II	GTNNAC	3 cut(s)	43, 136, 372
Hpy188I	TCNGA	2 cut(s)	17, 94
Hpy188III	TCNNGA	2 cut(s)	107, 381
Hpy8I	GTNNAC	3 cut(s)	43, 136, 372
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	113, 123, 287
HpyF3I	CTNAG	2 cut(s)	198, 312
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	10, 72, 179, 232, 268, 357
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	3 cut(s)	168, 198, 210
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	62, 215
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	155, 264
MluCI	AATT	2 cut(s)	204, 362
MnlI	CCTC	4 cut(s)	186, 193, 307, 339
NcoI	CCATGG	2 cut(s)	175, 353
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	6 cut(s)	10, 72, 179, 232, 268, 357
NlaIV	GGNNCC	3 cut(s)	301, 351, 359
NmuCI	GTSAC	2 cut(s)	62, 215
NspI	RCATGY	2 cut(s)	72, 232
PceI	AGGCCT	1 cut(s)	196
PciI	ACATGT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 93
PkrI	GCNGC	2 cut(s)	74, 147
PscI	ACATGT	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	301, 351, 359
PspPI	GGNCC	2 cut(s)	357, 378
SacI	GAGCTC	1 cut(s)	264
SatI	GCNGC	2 cut(s)	73, 146
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	357, 378
SduI	GDGCHC	2 cut(s)	155, 264
SetI	ASST	8 cut(s)	129, 172, 214, 264, 282, 297, 309, 318
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	2 cut(s)	357, 378
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	204, 362
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	73
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	196
StyI	CCWWGG	4 cut(s)	30, 175, 220, 353
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	282
TasI	AATT	2 cut(s)	204, 362
TauI	GCSGC	1 cut(s)	75
TscAI	CASTG	2 cut(s)	250, 316
TseFI	GTSAC	2 cut(s)	62, 215
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	2 cut(s)	62, 215
TspRI	CASTG	2 cut(s)	250, 316
VpaK11BI	GGWCC	2 cut(s)	357, 378
XceI	RCATGY	2 cut(s)	72, 232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.