Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0028549

Physical Location & Seq

Genomic Coordinates Reverse (-)

10204926 .. 10205300

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATACATCAGCAGAGGCACGCCGGAACTGCCCCCCACGGGATTCTACTAGCGGTGGTGGTCGTGGTGTTGATCGTGGTGCCGTCCTATGTAGGTGAACAAGGGGAGGCCATAATTGAAGCCTTCAGCGCGCTTTTGAGCCAGTTGGGTCTACTCTTTCTCCCCATTATTCTCCTCGTGATCATCATTCAGTTCCTGTCTTCCAATAGCGGCTCCCTCGTCTCCTCGTTCTCGACCGGGGATCCCTACACCACCCACAGCATTAGTGGCTCGCCGTCGCCGGTTGGGGTTGCATTGTTTCTCTGCCTCGTTTTATTCCTTCTTTACAACAAGGTTTCGATCTTCGGCGGGGGCGGCGACGAAGGGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

12.96

Weight (kDa)

4.88

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028549)

Species	Orthologous Gene IDs
malus_domestica	MD16G1168200.v1.1
pyrus_communis	pycom16g14160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	131
AciI	CCGC	4 cut(s)	53, 210, 348, 354
AclWI	GGATC	2 cut(s)	236, 249
AcuI	CTGAAG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	236, 249
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	131, 133
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	192
BceAI	ACGGC	2 cut(s)	67, 259
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	211, 355
BlsI	GCNGC	2 cut(s)	212, 356
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	81, 214, 243
BmrFI	CCNGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	37, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	37, 237
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	142
BsePI	GCGCGC	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	164, 214
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	24, 237, 281
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	72, 180, 241, 339
BspACI	CCGC	4 cut(s)	53, 210, 348, 354
BspANI	GGCC	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	81, 214, 243
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	37, 237
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	4 cut(s)	72, 180, 241, 339
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	21, 131, 272
BstDSI	CCRYGG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	131, 133
BstKTI	GATC	4 cut(s)	75, 183, 244, 342
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	4 cut(s)	72, 180, 241, 339
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 128, 267, 354
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	21, 131, 272
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	2 cut(s)	131, 133
Cfr10I	RCCGGY	1 cut(s)	280
CviJI	RGCY	5 cut(s)	110, 122, 141, 213, 270
CviKI_1	RGCY	5 cut(s)	110, 122, 141, 213, 270
DpnI	GATC	4 cut(s)	74, 182, 243, 341
DpnII	GATC	4 cut(s)	72, 180, 241, 339
Eco57I	CTGAAG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	226
FaiI	YATR	2 cut(s)	90, 113
FauI	CCCGC	1 cut(s)	341
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	211, 355
Fsp4HI	GCNGC	2 cut(s)	211, 355
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	130, 132
GluI	GCNGC	2 cut(s)	211, 355
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	3 cut(s)	24, 237, 281
HhaI	GCGC	2 cut(s)	131, 133
Hin6I	GCGC	2 cut(s)	129, 131
HinP1I	GCGC	2 cut(s)	129, 131
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	3 cut(s)	24, 237, 281
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	98, 152
Hpy188III	TCNNGA	2 cut(s)	178, 232
Hpy8I	GTNNAC	2 cut(s)	98, 152
Hpy99I	CGWCG	2 cut(s)	280, 362
HpyAV	CCTTC	3 cut(s)	133, 329, 356
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 128, 267, 354
HspAI	GCGC	2 cut(s)	129, 131
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	72, 180, 241, 339
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	5 cut(s)	37, 155, 209, 250, 294
MaeI	CTAG	1 cut(s)	50
MalI	GATC	4 cut(s)	74, 182, 243, 341
MboI	GATC	4 cut(s)	72, 180, 241, 339
MboII	GAAGA	2 cut(s)	192, 334
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	7 cut(s)	9, 100, 185, 227, 235, 317, 361
MspI	CCGG	3 cut(s)	24, 237, 281
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	29, 128, 267, 354
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	4 cut(s)	72, 180, 241, 339
NlaIV	GGNNCC	3 cut(s)	81, 214, 243
PauI	GCGCGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	212, 356
PspN4I	GGNNCC	3 cut(s)	81, 214, 243
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	241
PteI	GCGCGC	1 cut(s)	129
SatI	GCNGC	2 cut(s)	211, 355
Sau3AI	GATC	4 cut(s)	72, 180, 241, 339
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	2 cut(s)	97, 336
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	4 cut(s)	53, 210, 348, 354
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	236
TaqI	TCGA	2 cut(s)	233, 338
TasI	AATT	1 cut(s)	114
TauI	GCSGC	2 cut(s)	213, 357
TfiI	GAWTC	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.