Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029477

Physical Location & Seq

Genomic Coordinates Forward (+)

10750993 .. 10751355

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCCGAACGCCAGTCCTCTTCCTTCCCCATCTCCTCTTCTTTCCCCCACAGTCCACACACCCCCCATTCCTTCCCCAATTCATTAGGGTTTTTCCCTTTACCCTTCCCCTCCCCTGCTCTGCATAGAAGAAATGAGTCGATGACTGATTTTGATCCTGCTTTTGATCACATTGATCCTGCTTTCGATCCTCTGGATGTTTCATTTAGTTCCACAAGCTTTTCATATTCAAAAGAATCCGTCCAAACTTGGTCTGGCCCATTGGTAAAACCAGCTGCAGTCGGGGCTCCAAGGAGAAAGCAACACTCGTCCGGACAAATTCATGTGCTCTCGAAGCCCTTAAGGAAAGACCCAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

121

Amino Acids

13.3

Weight (kDa)

9.22

Isoelectric Point (pI)

74.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029477)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g14680 pycom16g14690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	311
AclWI	GGATC	3 cut(s)	149, 170, 182
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	318
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	2 cut(s)	219, 275
AluI	AGCT	2 cut(s)	219, 275
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	149, 170, 182
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	3, 256
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	5, 258
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	312
BsnI	GGCC	2 cut(s)	5, 258
Bsp1286I	GDGCHC	2 cut(s)	289, 330
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	154, 166, 175, 187
BspANI	GGCC	2 cut(s)	5, 258
BspEI	TCCGGA	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	149, 170, 182
BspTI	CTTAAG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	4 cut(s)	154, 166, 175, 187
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	25, 43
BstAFI	CTTAAG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	157, 169, 178, 190
BstMBI	GATC	4 cut(s)	154, 166, 175, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 334
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	5, 258
BtsCI	GGATG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	6 cut(s)	5, 219, 258, 275, 287, 337
CviKI_1	RGCY	6 cut(s)	5, 219, 258, 275, 287, 337
DpnI	GATC	4 cut(s)	156, 168, 177, 189
DpnII	GATC	4 cut(s)	154, 166, 175, 187
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	25, 43
EarI	CTCTTC	2 cut(s)	25, 43
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	1 cut(s)	326
FaiI	YATR	3 cut(s)	126, 226, 324
FatI	CATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	5, 258
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	2 cut(s)	137, 236
HpaII	CCGG	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188III	TCNNGA	3 cut(s)	194, 312, 331
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	34, 82, 115
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	124, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 334
Hsp92II	CATG	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	154, 166, 175, 187
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	26, 129, 171, 179, 192, 240, 285, 325
Lsp1109I	GCAGC	1 cut(s)	262
MalI	GATC	4 cut(s)	156, 168, 177, 189
MboI	GATC	4 cut(s)	154, 166, 175, 187
MboII	GAAGA	3 cut(s)	12, 30, 141
MhlI	GDGCHC	2 cut(s)	289, 330
MluCI	AATT	2 cut(s)	79, 318
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	28, 46, 121, 201
MroI	TCCGGA	1 cut(s)	311
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	284, 334
NdeII	GATC	4 cut(s)	154, 166, 175, 187
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	154, 166, 175, 187
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	289, 330
SetI	ASST	2 cut(s)	221, 277
SfcI	CTRYAG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	79, 318
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	140, 186, 332
TasI	AATT	2 cut(s)	79, 318
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	72, 192, 213, 311
TspGWI	ACGGA	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.