Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029477

Physical Location & Seq

Genomic Coordinates Forward (+)

10754585 .. 10754969

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAGCTGATGAGGCGACGTCTAATCATACATGCAAATGTGAAGACCAAGAGTGAGAAGTTTCCTCCTCCGCACCAAGACGGAACATTTGGCTATCCTTTGGGTTCATCAGATCACATTGATCCGGCTTTTGATCCTCTGGATGTTTCATCTAGTTCCACAAGCTTTTCATACTCAGAAGAATCCGTCCAAACTTGGTCTGGCCCATTGGTAAAACCAGCTGCAGTCGGGGCTCCAGGGAGAAAGCAACACTCGTCCGGACAAATTCATGTACTCTCGAAGCCCTTAAGGAAAGACTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

103

Amino Acids

11.23

Weight (kDa)

9.82

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029477)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g14680 pycom16g14690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	116, 128
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	3 cut(s)	7, 165, 221
AluI	AGCT	3 cut(s)	7, 165, 221
AlwI	GGATC	2 cut(s)	116, 128
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	4, 221
ApoI	RAATTY	1 cut(s)	264
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspS9I	GGNCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	16, 208
BciT130I	CCWGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	2 cut(s)	5, 222
BlsI	GCNGC	2 cut(s)	6, 223
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	16, 208
BshFI	GGCC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	125, 258
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	112, 121, 133
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	188
BspEI	TCCGGA	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	116, 128
BspTI	CTTAAG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	3 cut(s)	112, 121, 133
BssNI	GRCGYC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	115, 124, 136
BstMBI	GATC	3 cut(s)	112, 121, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 230
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	16, 208
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	32, 269
CviJI	RGCY	8 cut(s)	7, 93, 128, 165, 204, 221, 233, 283
CviKI_1	RGCY	8 cut(s)	7, 93, 128, 165, 204, 221, 233, 283
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	3 cut(s)	114, 123, 135
DpnII	GATC	3 cut(s)	112, 121, 133
Eco24I	GRGCYC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	2 cut(s)	35, 272
FaiI	YATR	4 cut(s)	29, 33, 172, 270
FatI	CATG	2 cut(s)	31, 268
Fnu4HI	GCNGC	2 cut(s)	5, 222
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	5, 222
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	2 cut(s)	5, 222
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	125, 258
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	35, 272
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	182, 296
HpaII	CCGG	2 cut(s)	125, 258
Hpy188I	TCNGA	2 cut(s)	112, 178
Hpy188III	TCNNGA	3 cut(s)	140, 258, 277
Hpy99I	CGWCG	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	4, 35, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 230
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	35, 272
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	112, 121, 133
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	125, 138, 186, 222, 231, 249, 271
Lsp1109I	GCAGC	2 cut(s)	16, 208
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	19
MalI	GATC	3 cut(s)	114, 123, 135
MboI	GATC	3 cut(s)	112, 121, 133
MboII	GAAGA	2 cut(s)	55, 191
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	6, 75, 78, 147
MroI	TCCGGA	1 cut(s)	257
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	2 cut(s)	7, 221
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	2 cut(s)	125, 258
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	13, 230
NdeII	GATC	3 cut(s)	112, 121, 133
NlaIII	CATG	2 cut(s)	35, 272
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	6, 223
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	7, 221
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	5, 222
Sau3AI	GATC	3 cut(s)	112, 121, 133
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	4 cut(s)	9, 22, 167, 223
SfcI	CTRYAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	235
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseI	GCWGC	2 cut(s)	4, 221
TspDTI	ATGAA	4 cut(s)	96, 138, 159, 257
TspGWI	ACGGA	2 cut(s)	96, 175
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.