pycom16g19240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0022569
Physical Location & Seq
Forward (+)
16232019 .. 16232988
970 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGCTTCAACCAAAGAAGCCAATTCTAACTACGGCAAAGCACTCGTACTTTTCTGCGGATGGAAGCATACAAATAACAAAATCAGGAGATTCAAAATACCATGGAGAATTCGATCTATTGTTAGGGGGATTAGAATCACATCTTTCGGAATACAAAATCTTACCGATAATAATAATAACATTTTTAAAAAACATAAAATTTAATACGGAAATTAGATTCTATCTAAACAGACGGGGGCGTGGACGAAGTATTCGGTTCGACTACTTTTCTAAGCTGAATCACGTTAGGCTTCTCCGAGTCCTCATCGTCGTGGTACACGTAAGCAAACCCGCCGTGCCGGGTCAGATCCATACCCGCCATTTCGTCCTCAGCCGAGATCCTCAACAGCTTCAGCTTGTGCAGCACAAAGAACAAGGGCCCCATCGTAGCGCTCACCCACCCAATAATCACCACTATCTGGATCAAGTGGGCCCCCAGCAGCTTCCCTCCGCCCCCCATAAACAACCCGTAAGGCCGCCCCTCTTGTCCCGGATACACCTCGTTCACGTACTTCTCCGTCGCAAACAGCGCCGTAAAAATAATCCCCCACGCGCCGCACCCACCGTGAAGCTGCGCCGCCTCCAGCGGGTCGTCGTATTTCAACTTCTCCGCCAATTTGTTGCACGAGATCAAAACGATAGCGGCGACGAATCCGCATACTATCGCCGCCCACGGTTCGACAACAGAGCATCCCGCCGTTATCGCCGCGAATCCGCCCAGAAGACCGTTACAAACGTCCGTTACGTTCCAGTGACCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

31.04

Weight (kDa)

11.29

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022569)

Species Orthologous Gene IDs
pyrus_communis pycom16g19240
rosa_laevigata RLG00000004408
rosa_samantha Rh4AG065200 Rh4AG065400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AccII CGCG 2 cut(s) 591, 747
AclWI GGATC 3 cut(s) 340, 371, 468
AcsI RAATTY 2 cut(s) 107, 197
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 3 cut(s) 47, 315, 549
AfeI AGCGCT 1 cut(s) 430
AfiI CCNNNNNNNGG 3 cut(s) 457, 625, 794
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 3 cut(s) 8, 93, 641
AluBI AGCT 5 cut(s) 274, 388, 394, 481, 610
AluI AGCT 5 cut(s) 274, 388, 394, 481, 610
AlwI GGATC 3 cut(s) 340, 371, 468
Aor51HI AGCGCT 1 cut(s) 430
AoxI GGCC 3 cut(s) 416, 469, 512
ApaI GGGCCC 2 cut(s) 420, 473
ApeKI GCWGC 3 cut(s) 400, 478, 610
ApoI RAATTY 2 cut(s) 107, 197
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 4 cut(s) 431, 570, 593, 615
AspS9I GGNCC 4 cut(s) 416, 417, 469, 470
AsuC2I CCSGG 2 cut(s) 339, 529
AsuHPI GGTGA 2 cut(s) 425, 440
BaeGI GKGCMC 2 cut(s) 420, 473
BanII GRGCYC 2 cut(s) 420, 473
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
BauI CACGAG 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 767
BbvCI CCTCAGC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 412, 490, 597
BccI CCATC 2 cut(s) 53, 429
BceAI ACGGC 4 cut(s) 48, 317, 555, 720
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciVI GTATCC 1 cut(s) 525
BcnI CCSGG 2 cut(s) 339, 529
BfoI RGCGCY 2 cut(s) 432, 571
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 9 cut(s) 401, 479, 515, 594, 611, 616, 682, 706, 745
BlsI GCNGC 9 cut(s) 402, 480, 516, 595, 612, 617, 683, 707, 746
Bme1390I CCNGG 2 cut(s) 339, 529
BmgT120I GGNCC 4 cut(s) 416, 417, 469, 470
BmiI GGNNCC 4 cut(s) 418, 419, 471, 472
BmrFI CCNGG 2 cut(s) 339, 529
BmsI GCATC 1 cut(s) 737
BpiI GAAGAC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 339, 529
BsaAI YACGTR 2 cut(s) 319, 547
BsaBI GATNNNNATC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 100, 710
BsaWI WCCGGW 1 cut(s) 794
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 625, 794
Bse1I ACTGG 1 cut(s) 788
Bse8I GATNNNNATC 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 100, 710
BseGI GGATG 2 cut(s) 64, 728
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 3 cut(s) 457, 625, 794
BseMII CTCAG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 788
BseSI GKGCMC 2 cut(s) 420, 473
BseXI GCAGC 3 cut(s) 412, 490, 597
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 2 cut(s) 591, 747
BshFI GGCC 3 cut(s) 418, 471, 514
BsiSI CCGG 3 cut(s) 338, 529, 795
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 3 cut(s) 457, 625, 794
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 3 cut(s) 418, 471, 514
Bsp120I GGGCCC 2 cut(s) 416, 469
Bsp1286I GDGCHC 2 cut(s) 420, 473
Bsp143I GATC 5 cut(s) 112, 345, 376, 460, 667
Bsp19I CCATGG 1 cut(s) 100
BspANI GGCC 3 cut(s) 418, 471, 514
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 2 cut(s) 591, 747
BspLI GGNNCC 4 cut(s) 418, 419, 471, 472
BspPI GGATC 3 cut(s) 340, 371, 468
BsrI ACTGG 1 cut(s) 788
BssECI CCNNGG 2 cut(s) 100, 710
BssMI GATC 5 cut(s) 112, 345, 376, 460, 667
BssSI CACGAG 1 cut(s) 663
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 663
Bst4CI ACNGT 3 cut(s) 604, 714, 766
BstBAI YACGTR 2 cut(s) 319, 547
BstDEI CTNAG 2 cut(s) 270, 368
BstDSI CCRYGG 2 cut(s) 100, 710
BstF5I GGATG 2 cut(s) 64, 728
BstFNI CGCG 2 cut(s) 591, 747
BstH2I RGCGCY 2 cut(s) 432, 571
BstHHI GCGC 4 cut(s) 431, 570, 593, 615
BstKTI GATC 5 cut(s) 115, 348, 379, 463, 670
BstMBI GATC 5 cut(s) 112, 345, 376, 460, 667
BstMWI GCNNNNNNNGC 3 cut(s) 400, 567, 741
BstSCI CCNGG 2 cut(s) 337, 527
BstSLI GKGCMC 2 cut(s) 420, 473
BstUI CGCG 2 cut(s) 591, 747
BstV1I GCAGC 3 cut(s) 412, 490, 597
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 2 cut(s) 345, 376
BstYI RGATCY 2 cut(s) 345, 376
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 3 cut(s) 418, 471, 514
BtgI CCRYGG 2 cut(s) 100, 710
BtsCI GGATG 2 cut(s) 64, 728
BtsIMutI CAGTG 1 cut(s) 795
CfoI GCGC 4 cut(s) 431, 570, 593, 615
Cfr13I GGNCC 4 cut(s) 416, 417, 469, 470
Csp6I GTAC 3 cut(s) 46, 314, 548
CviAII CATG 1 cut(s) 101
CviQI GTAC 3 cut(s) 46, 314, 548
DdeI CTNAG 2 cut(s) 270, 368
DpnI GATC 5 cut(s) 114, 347, 378, 462, 669
DpnII GATC 5 cut(s) 112, 345, 376, 460, 667
DraI TTTAAA 1 cut(s) 186
EciI GGCGGA 3 cut(s) 478, 638, 742
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 420, 473
Eco47III AGCGCT 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 374
EcoO109I RGGNCCY 3 cut(s) 416, 417, 470
EcoRI GAATTC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 420, 473
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 104
FaiI YATR 6 cut(s) 68, 102, 194, 351, 498, 697
FaqI GGGAC 1 cut(s) 511
FatI CATG 1 cut(s) 100
FauI CCCGC 4 cut(s) 337, 362, 618, 740
Fnu4HI GCNGC 9 cut(s) 401, 479, 515, 594, 611, 616, 682, 706, 745
FokI GGATG 2 cut(s) 71, 715
FriOI GRGCYC 2 cut(s) 420, 473
Fsp4HI GCNGC 9 cut(s) 401, 479, 515, 594, 611, 616, 682, 706, 745
GlaI GCGC 4 cut(s) 430, 569, 592, 614
GluI GCNGC 9 cut(s) 401, 479, 515, 594, 611, 616, 682, 706, 745
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 1 cut(s) 605
HaeII RGCGCY 2 cut(s) 432, 571
HaeIII GGCC 3 cut(s) 418, 471, 514
HapII CCGG 3 cut(s) 338, 529, 795
HhaI GCGC 4 cut(s) 431, 570, 593, 615
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 4 cut(s) 429, 568, 591, 613
HinP1I GCGC 4 cut(s) 429, 568, 591, 613
HinfI GANTC 7 cut(s) 89, 134, 216, 277, 297, 689, 749
HpaII CCGG 3 cut(s) 338, 529, 795
HphI GGTGA 2 cut(s) 425, 440
Hpy166II GTNNAC 3 cut(s) 242, 316, 544
Hpy188I TCNGA 3 cut(s) 148, 296, 345
Hpy188III TCNNGA 2 cut(s) 84, 458
Hpy8I GTNNAC 3 cut(s) 242, 316, 544
Hpy99I CGWCG 4 cut(s) 311, 561, 635, 689
HpyCH4III ACNGT 3 cut(s) 604, 714, 766
HpyCH4IV ACGT 5 cut(s) 282, 318, 546, 774, 783
HpyCH4V TGCA 2 cut(s) 400, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 400, 567, 741
HpyF3I CTNAG 2 cut(s) 270, 368
HpySE526I ACGT 5 cut(s) 282, 318, 546, 774, 783
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 4 cut(s) 429, 568, 591, 613
Kzo9I GATC 5 cut(s) 112, 345, 376, 460, 667
LpnPI CCDG 7 cut(s) 69, 351, 443, 488, 542, 635, 770
Lsp1109I GCAGC 3 cut(s) 412, 490, 597
LweI GCATC 1 cut(s) 737
MaeII ACGT 5 cut(s) 282, 318, 546, 774, 783
MaeIII GTNAC 3 cut(s) 766, 779, 790
MalI GATC 5 cut(s) 114, 347, 378, 462, 669
MboI GATC 5 cut(s) 112, 345, 376, 460, 667
MboII GAAGA 1 cut(s) 772
MflI RGATCY 2 cut(s) 345, 376
MhlI GDGCHC 2 cut(s) 420, 473
MluCI AATT 5 cut(s) 21, 107, 197, 210, 653
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 7 cut(s) 311, 377, 390, 496, 530, 548, 629
MseI TTAA 2 cut(s) 185, 201
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 3 cut(s) 338, 529, 795
MspR9I CCNGG 2 cut(s) 339, 529
MvnI CGCG 2 cut(s) 591, 747
MwoI GCNNNNNNNGC 3 cut(s) 400, 567, 741
NciI CCSGG 2 cut(s) 339, 529
NcoI CCATGG 1 cut(s) 100
NdeII GATC 5 cut(s) 112, 345, 376, 460, 667
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 4 cut(s) 418, 419, 471, 472
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 790
PcsI WCGNNNNNNNCGW 3 cut(s) 315, 681, 780
PfeI GAWTC 6 cut(s) 89, 134, 216, 277, 689, 749
PflMI CCANNNNNTGG 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 527
PkrI GCNGC 9 cut(s) 402, 480, 516, 595, 612, 617, 683, 707, 746
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 2 cut(s) 319, 547
PspFI CCCAGC 1 cut(s) 474
PspN4I GGNNCC 4 cut(s) 418, 419, 471, 472
PspOMI GGGCCC 2 cut(s) 416, 469
PspPI GGNCC 4 cut(s) 416, 417, 469, 470
PsuI RGATCY 2 cut(s) 345, 376
RsaI GTAC 3 cut(s) 47, 315, 549
RsaNI GTAC 3 cut(s) 46, 314, 548
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 185, 201
SatI GCNGC 9 cut(s) 401, 479, 515, 594, 611, 616, 682, 706, 745
Sau3AI GATC 5 cut(s) 112, 345, 376, 460, 667
Sau96I GGNCC 4 cut(s) 416, 417, 469, 470
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 339, 529
SduI GDGCHC 2 cut(s) 420, 473
SfaNI GCATC 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 5 cut(s) 21, 107, 197, 210, 653
StyD4I CCNGG 2 cut(s) 337, 527
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 604, 714, 766
TaiI ACGT 5 cut(s) 285, 321, 549, 777, 786
TaqI TCGA 3 cut(s) 111, 258, 717
TasI AATT 5 cut(s) 21, 107, 197, 210, 653
TauI GCSGC 6 cut(s) 517, 596, 618, 684, 708, 747
TfiI GAWTC 6 cut(s) 89, 134, 216, 277, 689, 749
Tru1I TTAA 2 cut(s) 185, 201
Tru9I TTAA 2 cut(s) 185, 201
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 3 cut(s) 400, 478, 610
Tsp45I GTSAC 1 cut(s) 790
TspGWI ACGGA 3 cut(s) 221, 545, 767
TspRI CASTG 1 cut(s) 795
Van91I CCANNNNNTGG 1 cut(s) 457
XapI RAATTY 2 cut(s) 107, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.