RLG00000004408

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0022569
Physical Location & Seq
Reverse (-)
59105717 .. 59107615
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004408

Sequence Viewer

Length: 390 bp
ATGTCGAAGCCAAGATCGAAGCCTTCAAGCAAACACGCTGCACCCGTCATGGAGTTGAGCCGCCTCCAATGGATCGTCGTACTTGAGCTTATCGGCAAGTTTGTTGCACGAGACGAGAACAACAATGGCAACAAAGTCGAAGATGATGGCTGCCCAGGGCCAGATGATAGAGTAGCCGACAATGATGGCATGGCCGTGAAGCTGCTAAGGAGGCCGTTGCAGACGTTGGTGACGTTCCAGTGGTTGGAGCGAGTTGACTCGGACAGATTGATGATGGAGGCCTGGACATTTCCTGAGATTTTGGACTTCACTTTGGAGCTTTACAATCTAAACATGTCCATACTATTTGTCCTCTTGTTTGAGTGCGTCTTCCACAAAGGCACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

5.38

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022569)

Species Orthologous Gene IDs
pyrus_communis pycom16g19240
rosa_laevigata RLG00000004408
rosa_samantha Rh4AG065200 Rh4AG065400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 1 cut(s) 27
AjnI CCWGG 2 cut(s) 154, 281
AluBI AGCT 3 cut(s) 88, 202, 319
AluI AGCT 3 cut(s) 88, 202, 319
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 80
AoxI GGCC 4 cut(s) 158, 192, 212, 279
ApeKI GCWGC 3 cut(s) 38, 150, 202
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 241
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 361
BbvI GCAGC 3 cut(s) 25, 137, 189
BccI CCATC 3 cut(s) 140, 179, 268
BceAI ACGGC 2 cut(s) 179, 199
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 156, 283
BcoDI GTCTC 1 cut(s) 105
BisI GCNGC 4 cut(s) 39, 61, 151, 203
BlsI GCNGC 4 cut(s) 40, 62, 152, 204
Bme1390I CCNGG 2 cut(s) 156, 283
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 156, 283
BpiI GAAGAC 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 154, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 2 cut(s) 156, 283
BseDI CCNNGG 2 cut(s) 154, 155
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 25, 137, 189
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 4 cut(s) 160, 194, 214, 281
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 4 cut(s) 160, 194, 214, 281
Bsp143I GATC 2 cut(s) 14, 72
BspACI CCGC 1 cut(s) 61
BspANI GGCC 4 cut(s) 160, 194, 214, 281
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 154, 155
BssMI GATC 2 cut(s) 14, 72
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 156, 283
BstDEI CTNAG 2 cut(s) 206, 294
BstKTI GATC 2 cut(s) 17, 75
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 14, 72
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 2 cut(s) 156, 283
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 154, 281
BstV1I GCAGC 3 cut(s) 25, 137, 189
BstV2I GAAGAC 1 cut(s) 361
BsuRI GGCC 4 cut(s) 160, 194, 214, 281
BtsIMutI CAGTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 49, 190, 334
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 206, 294
DpnI GATC 2 cut(s) 16, 74
DpnII GATC 2 cut(s) 14, 72
DraIII CACNNNGTG 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 154, 281
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 3 cut(s) 52, 193, 337
FaiI YATR 4 cut(s) 50, 191, 335, 341
FatI CATG 3 cut(s) 48, 189, 333
Fnu4HI GCNGC 4 cut(s) 39, 61, 151, 203
Fsp4HI GCNGC 4 cut(s) 39, 61, 151, 203
GluI GCNGC 4 cut(s) 39, 61, 151, 203
HaeIII GGCC 4 cut(s) 160, 194, 214, 281
HgaI GACGC 1 cut(s) 355
Hin1II CATG 3 cut(s) 52, 193, 337
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 257
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 33
HpyCH4IV ACGT 2 cut(s) 224, 233
HpyCH4V TGCA 3 cut(s) 41, 107, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 206, 294
HpySE526I ACGT 2 cut(s) 224, 233
Hsp92II CATG 3 cut(s) 52, 193, 337
Kzo9I GATC 2 cut(s) 14, 72
LmnI GCTCC 2 cut(s) 247, 316
LpnPI CCDG 7 cut(s) 141, 168, 174, 251, 268, 295, 306
Lsp1109I GCAGC 3 cut(s) 25, 137, 189
MaeII ACGT 2 cut(s) 224, 233
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 16, 74
MboI GATC 2 cut(s) 14, 72
MboII GAAGA 2 cut(s) 152, 361
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 4 cut(s) 74, 204, 271, 362
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 156, 283
MvaI CCWGG 2 cut(s) 156, 283
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 2 cut(s) 14, 72
NlaIII CATG 3 cut(s) 52, 193, 337
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 281
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 230
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 4 cut(s) 40, 62, 152, 204
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 154, 281
PspGI CCWGG 2 cut(s) 154, 281
PspPI GGNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 4 cut(s) 39, 61, 151, 203
Sau3AI GATC 2 cut(s) 14, 72
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 156, 283
SetI ASST 5 cut(s) 90, 204, 227, 236, 321
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 154, 281
TaiI ACGT 2 cut(s) 227, 236
TaqI TCGA 3 cut(s) 5, 17, 138
TauI GCSGC 1 cut(s) 63
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 38, 150, 202
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 244
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.