Rh4AG065200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0022569
Physical Location & Seq
Reverse (-)
13818675 .. 13819031
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG065200.1

Sequence Viewer

Length: 357 bp
ATGGTAGACGTAAGCAAACCCACCGTGCCGGGTCATATCCATACCCGCCATTTCATCCTCGGCCGAAATCCTCAGCAGCTTAAGCTTGTGAAGAATGAAGAACAGAGGGCCCATAGTGGCGCTGACCCACCCGGTGATCACCAGAATCTGGATCAAATGGGCCCCCAACAGCCTGCCTCCGCCGCCCATGAACAGCCCATAGGGCCGACCAACCGCGTACACTTCGTTCACGTACTTCTCGCTCGCGAAAAGCGCGGTGAAGATGATCCCCCACGCGCCGCACCCGCCGTGGAGCTGAGCCGCCTCCAAGGGGTCGTCGTACTTGACCTTCTCGGCGAGTTTGTTGCAGGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.84

Weight (kDa)

6.43

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022569)

Species Orthologous Gene IDs
pyrus_communis pycom16g19240
rosa_laevigata RLG00000004408
rosa_samantha Rh4AG065200 Rh4AG065400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 1 cut(s) 6
AccII CGCG 4 cut(s) 216, 246, 255, 276
AciI CCGC 8 cut(s) 46, 180, 183, 214, 255, 279, 285, 301
AclWI GGATC 2 cut(s) 159, 260
AcoI YGGCCR 1 cut(s) 61
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 3 cut(s) 219, 234, 321
AfiI CCNNNNNNNGG 2 cut(s) 148, 310
AflII CTTAAG 1 cut(s) 80
AluBI AGCT 3 cut(s) 79, 85, 295
AluI AGCT 3 cut(s) 79, 85, 295
AlwI GGATC 2 cut(s) 159, 260
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 4 cut(s) 61, 108, 160, 203
ApaI GGGCCC 2 cut(s) 112, 164
ApeKI GCWGC 1 cut(s) 76
AspLEI GCGC 4 cut(s) 122, 255, 278, 353
AspS9I GGNCC 5 cut(s) 108, 109, 160, 161, 203
AsuC2I CCSGG 2 cut(s) 30, 132
AsuHPI GGTGA 3 cut(s) 131, 146, 269
BaeGI GKGCMC 2 cut(s) 112, 164
BanII GRGCYC 2 cut(s) 112, 164
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 1 cut(s) 326
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 2 cut(s) 30, 132
BfoI RGCGCY 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 202
BisI GCNGC 4 cut(s) 77, 183, 279, 301
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 4 cut(s) 78, 184, 280, 302
Bme1390I CCNGG 2 cut(s) 30, 132
BmgT120I GGNCC 5 cut(s) 108, 109, 160, 161, 203
BmiI GGNNCC 3 cut(s) 110, 162, 163
BmrFI CCNGG 2 cut(s) 30, 132
Bpu10I CCTNAGC 1 cut(s) 72
Bpu1102I GCTNAGC 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 30, 132
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 58, 288, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 310
BseDI CCNNGG 3 cut(s) 58, 288, 307
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 148, 310
BseMII CTCAG 2 cut(s) 86, 287
BseSI GKGCMC 2 cut(s) 112, 164
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 4 cut(s) 216, 246, 255, 276
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 4 cut(s) 63, 110, 162, 205
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 2 cut(s) 29, 132
BslI CCNNNNNNNGG 2 cut(s) 148, 310
BsnI GGCC 4 cut(s) 63, 110, 162, 205
Bsp120I GGGCCC 2 cut(s) 108, 160
Bsp1286I GDGCHC 2 cut(s) 112, 164
Bsp143I GATC 3 cut(s) 136, 151, 265
Bsp1720I GCTNAGC 1 cut(s) 296
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 8 cut(s) 46, 180, 183, 214, 255, 279, 285, 301
BspANI GGCC 4 cut(s) 63, 110, 162, 205
BspCNI CTCAG 2 cut(s) 85, 288
BspFNI CGCG 4 cut(s) 216, 246, 255, 276
BspLI GGNNCC 3 cut(s) 110, 162, 163
BspPI GGATC 2 cut(s) 159, 260
BspTI CTTAAG 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 58, 288, 307
BssMI GATC 3 cut(s) 136, 151, 265
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 174, 244, 349
BstDEI CTNAG 2 cut(s) 72, 296
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 4 cut(s) 216, 246, 255, 276
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 4 cut(s) 122, 255, 278, 353
BstKTI GATC 3 cut(s) 139, 154, 268
BstMBI GATC 3 cut(s) 136, 151, 265
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 5 cut(s) 82, 182, 202, 252, 284
BstSCI CCNGG 2 cut(s) 28, 130
BstSLI GKGCMC 2 cut(s) 112, 164
BstUI CGCG 4 cut(s) 216, 246, 255, 276
BstV1I GCAGC 1 cut(s) 88
BstZI CGGCCG 1 cut(s) 61
BsuRI GGCC 4 cut(s) 63, 110, 162, 205
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 54
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 174, 244, 349
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 4 cut(s) 122, 255, 278, 353
Cfr13I GGNCC 5 cut(s) 108, 109, 160, 161, 203
Csp6I GTAC 3 cut(s) 218, 233, 320
CviAII CATG 1 cut(s) 188
CviQI GTAC 3 cut(s) 218, 233, 320
DdeI CTNAG 2 cut(s) 72, 296
DpnI GATC 3 cut(s) 138, 153, 267
DpnII GATC 3 cut(s) 136, 151, 265
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 61
EagI CGGCCG 1 cut(s) 61
EciI GGCGGA 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 112, 164
Eco52I CGGCCG 1 cut(s) 61
EcoO109I RGGNCCY 2 cut(s) 108, 161
EcoT14I CCWWGG 1 cut(s) 307
EcoT38I GRGCYC 2 cut(s) 112, 164
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 191
FaiI YATR 6 cut(s) 36, 42, 114, 189, 200, 355
FatI CATG 1 cut(s) 187
FauI CCCGC 2 cut(s) 53, 292
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 77, 183, 279, 301
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 2 cut(s) 112, 164
Fsp4HI GCNGC 4 cut(s) 77, 183, 279, 301
GlaI GCGC 4 cut(s) 121, 254, 277, 352
GluI GCNGC 4 cut(s) 77, 183, 279, 301
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 4 cut(s) 63, 110, 162, 205
HapII CCGG 2 cut(s) 29, 132
HhaI GCGC 4 cut(s) 122, 255, 278, 353
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 4 cut(s) 120, 253, 276, 351
HinP1I GCGC 4 cut(s) 120, 253, 276, 351
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 145
HpaII CCGG 2 cut(s) 29, 132
HphI GGTGA 3 cut(s) 131, 146, 269
Hpy166II GTNNAC 3 cut(s) 7, 220, 229
Hpy188III TCNNGA 2 cut(s) 149, 245
Hpy8I GTNNAC 3 cut(s) 7, 220, 229
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 9, 231
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 182, 202, 252, 284
HpyF3I CTNAG 2 cut(s) 72, 296
HpySE526I ACGT 2 cut(s) 9, 231
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 4 cut(s) 120, 253, 276, 351
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 3 cut(s) 136, 151, 265
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 42, 134, 145, 155, 186, 333
Lsp1109I GCAGC 1 cut(s) 88
MaeII ACGT 2 cut(s) 9, 231
MalI GATC 3 cut(s) 138, 153, 267
MboI GATC 3 cut(s) 136, 151, 265
MboII GAAGA 3 cut(s) 103, 110, 272
MhlI GDGCHC 2 cut(s) 112, 164
MnlI CCTC 5 cut(s) 68, 81, 99, 187, 314
MseI TTAA 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 2 cut(s) 29, 132
MspR9I CCNGG 2 cut(s) 30, 132
MvnI CGCG 4 cut(s) 216, 246, 255, 276
MwoI GCNNNNNNNGC 5 cut(s) 82, 182, 202, 252, 284
NciI CCSGG 2 cut(s) 30, 132
NdeII GATC 3 cut(s) 136, 151, 265
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 3 cut(s) 110, 162, 163
NmeAIII GCCGAG 2 cut(s) 39, 312
NruI TCGCGA 1 cut(s) 246
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 4 cut(s) 78, 184, 280, 302
Ppu21I YACGTR 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 110, 162, 163
PspOMI GGGCCC 2 cut(s) 108, 160
PspPI GGNCC 5 cut(s) 108, 109, 160, 161, 203
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
PstNI CAGNNNCTG 1 cut(s) 148
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 3 cut(s) 219, 234, 321
RsaNI GTAC 3 cut(s) 218, 233, 320
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 4 cut(s) 77, 183, 279, 301
Sau3AI GATC 3 cut(s) 136, 151, 265
Sau96I GGNCC 5 cut(s) 108, 109, 160, 161, 203
ScrFI CCNGG 2 cut(s) 30, 132
SduI GDGCHC 2 cut(s) 112, 164
SetI ASST 6 cut(s) 12, 81, 87, 234, 297, 330
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 8 cut(s) 46, 180, 183, 214, 255, 279, 285, 301
StyD4I CCNGG 2 cut(s) 28, 130
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 12, 234
TauI GCSGC 3 cut(s) 185, 281, 303
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 43, 111, 204
Van91I CCANNNNNTGG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.