pycom16g19860

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012057
Physical Location & Seq
Reverse (-)
17273303 .. 17274875
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g19860.1

Sequence Viewer

Length: 1212 bp
ATGAAGATCATTGGCATTTTGAAGTTGCAGTTCCGCAAACCCACAATGGTTCTTTGCCGGAATTTCAGAATTTCAGAATCTAAAGGTAGCTGTATTACAAAGACTTTAGAAAGGATGAGCACAGATGTTACAAGCACACAGGACATTGGATATGAATATGTGCCTATGGATGAAAAAGAACAGTGTTTTTCTGGTTCAAATCTTGTCAGTGATGACTTAGAGGGGAAGTTTGTGACTCATAGCAGTTACTCTGAAAGGATACACTACCATAGAAGTCTGGATTCAACTGTGACAGAATCTAGTTCCCATACTCCACATGGATGTTGTTCGCAAATGGCCAATGAAGTGGTTTGCATTAGAAACCAACTTGTGGAGATTGAAACCAAACAGTCAAACTTAATGGATCTTCTACAGGTGTTGACATCTGGCATACTGGATGGCTTGTCTGTGTTTCAAACAAGGGTGGTGGGTCTAGAGGATGTTGTAGACCGATTAGCTCAGAACTTTGAACACAGGAGGGAGCATTCAAATTTAGCAGCCTCCAAACTCATGAAACAGAGCCAGAATTTGCATTCTCCAAGGCTCTCCACAAGCACTCCGAGGCCATCTATAGATATGACCAGCCGGCAGGGGTCAATGTTGTCAGTGAAACATTCTGATACTTGGGAGGAAAACACAATTGGCAGGAGCCGAACAAACAATTCTGCAGGACACTGTACAGAAACATGGAGTAATAATAGGGGGAAGCTTACCCGGAATCCTATTGGGAAGGACATTCGGAAAATTCCTGGGCAGGGAACACAGAGGATAAGTAATGGTCAAACAAGGGCGGATGCTATGTTTTCTTCAGCTTCTATTTCTAATGCCAAAGTTAGACAAAATGTTGTAGATAGTAAGAATAACCTCTGGAAACAGTTGGAAAGGTTTTCTAGTGAAGGGGACCTCGACTCTGCATATGTGGAAGCTCTTTGTTCTGGTGATGAAATTGTTCTGGATGAGCTTCTTGAAGGAACCGGTCCAGTTCTGGAGTGCTTGTCGCCTAAAACTGCGAGGGATGTTCTCAGCACTTTAGCTTCATGTCTCCCAGAACAAAGGTTTATCAACACCATAATTCCTTGGTTGCAGCAGATTGCTGACTTGAGCACCAAGCGTGGACCAAACTACCTTGGCCTGCCAGCGAAAGCAAAACAAGAATTCTTGTCTTCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

404

Amino Acids

44.93

Weight (kDa)

7.13

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_C PF24713 303 - 402 5.8e-24 TORTIFOLIA1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07170
fragaria_vesca FvH4_4g05970 FvH4_4g05970 FvH4_4g05970
malus_domestica MD13G1232000.v1.1 MD16G1236800.v1.1
prunus_persica Prupe.1G063300_v2.0.a1
pyrus_communis pycom16g19860
rosa_chinensis RchiOBHm_Chr4g0397171
rosa_laevigata RLG00000009441
rosa_multiflora Rmu_sc0001796.1_g000023 Rmu_sc0002312.1_g000047
rosa_roxburghii Rroxscaffold_5G00342150
rosa_rugosa Rorug03G0344300
rosa_samantha Rh4AG077800 Rh4BG073300 Rh4CG083000 Rh4DG070900
rosa_wichuraiana Rw4G006290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 370
AccI GTMKAC 1 cut(s) 486
AciI CCGC 2 cut(s) 34, 830
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 6 cut(s) 61, 69, 529, 565, 783, 1193
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 370, 794
AgeI ACCGGT 1 cut(s) 1013
AgsI TTSAA 8 cut(s) 22, 198, 285, 380, 455, 509, 528, 1007
AjnI CCWGG 1 cut(s) 787
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 7 cut(s) 90, 497, 748, 851, 965, 1000, 1073
AluI AGCT 7 cut(s) 90, 497, 748, 851, 965, 1000, 1073
Alw21I GWGCWC 2 cut(s) 122, 1145
Alw26I GTCTC 1 cut(s) 1085
AlwI GGATC 1 cut(s) 411
AoxI GGCC 3 cut(s) 336, 602, 1168
ApeKI GCWGC 2 cut(s) 536, 1123
ApoI RAATTY 6 cut(s) 61, 69, 529, 565, 783, 1193
AsiGI ACCGGT 1 cut(s) 1013
Asp700I GAANNNNTTC 1 cut(s) 987
AspS9I GGNCC 3 cut(s) 940, 1016, 1154
AsuC2I CCSGG 1 cut(s) 754
AsuHPI GGTGA 1 cut(s) 989
AvaII GGWCC 3 cut(s) 940, 1016, 1154
BalI TGGCCA 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 1194
Bbv12I GWGCWC 2 cut(s) 122, 1145
BbvI GCAGC 2 cut(s) 548, 1135
BccI CCATC 2 cut(s) 431, 613
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 1085
BfaI CTAG 3 cut(s) 300, 473, 930
BfmI CTRYAG 3 cut(s) 410, 609, 705
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 2 cut(s) 537, 1124
BlsI GCNGC 2 cut(s) 538, 1125
Bme1390I CCNGG 2 cut(s) 754, 789
Bme18I GGWCC 3 cut(s) 940, 1016, 1154
BmgT120I GGNCC 3 cut(s) 940, 1016, 1154
BmiI GGNNCC 3 cut(s) 689, 941, 1012
BmrFI CCNGG 2 cut(s) 754, 789
BmsI GCATC 1 cut(s) 823
BpiI GAAGAC 1 cut(s) 1194
BpmI CTGGAG 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 1159
BpuMI CCSGG 1 cut(s) 754
BsaJI CCNNGG 5 cut(s) 578, 599, 788, 1115, 1165
BsaWI WCCGGW 1 cut(s) 1013
BsaXI ACNNNNNCTCC 4 cut(s) 580, 610, 1019, 1049
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 794
Bse118I RCCGGY 2 cut(s) 624, 1013
Bse1I ACTGG 2 cut(s) 438, 1019
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 5 cut(s) 578, 599, 788, 1115, 1165
BseGI GGATG 8 cut(s) 120, 175, 326, 442, 484, 838, 1000, 1060
BseLI CCNNNNNNNGG 2 cut(s) 370, 794
BseMII CTCAG 2 cut(s) 512, 1075
BseNI ACTGG 2 cut(s) 438, 1019
BseXI GCAGC 2 cut(s) 548, 1135
BshFI GGCC 3 cut(s) 338, 604, 1170
BshTI ACCGGT 1 cut(s) 1013
BsiHKAI GWGCWC 2 cut(s) 122, 1145
BsiSI CCGG 4 cut(s) 58, 625, 754, 1014
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 2 cut(s) 370, 794
BsmAI GTCTC 1 cut(s) 1085
BsmFI GGGAC 1 cut(s) 953
BsmI GAATGC 2 cut(s) 523, 571
BsnI GGCC 3 cut(s) 338, 604, 1170
Bsp1286I GDGCHC 2 cut(s) 122, 1145
Bsp1407I TGTACA 1 cut(s) 716
Bsp143I GATC 2 cut(s) 6, 403
BspACI CCGC 2 cut(s) 34, 830
BspANI GGCC 3 cut(s) 338, 604, 1170
BspCNI CTCAG 2 cut(s) 511, 1074
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 3 cut(s) 689, 941, 1012
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 624, 1013
BsrGI TGTACA 1 cut(s) 716
BsrI ACTGG 2 cut(s) 438, 1019
BssAI RCCGGY 2 cut(s) 624, 1013
BssECI CCNNGG 5 cut(s) 578, 599, 788, 1115, 1165
BssMI GATC 2 cut(s) 6, 403
BssT1I CCWWGG 3 cut(s) 578, 1115, 1165
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 5 cut(s) 183, 289, 390, 716, 915
BstAUI TGTACA 1 cut(s) 716
BstC8I GCNNGC 3 cut(s) 626, 1172, 1176
BstDEI CTNAG 3 cut(s) 217, 498, 1061
BstF5I GGATG 8 cut(s) 120, 175, 326, 442, 484, 838, 1000, 1060
BstKTI GATC 2 cut(s) 9, 406
BstMAI GTCTC 1 cut(s) 1085
BstMBI GATC 2 cut(s) 6, 403
BstNI CCWGG 1 cut(s) 789
BstSCI CCNGG 2 cut(s) 752, 787
BstSFI CTRYAG 3 cut(s) 410, 609, 705
BstV1I GCAGC 2 cut(s) 548, 1135
BstV2I GAAGAC 1 cut(s) 1194
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 403
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 3 cut(s) 338, 604, 1170
BtsCI GGATG 8 cut(s) 120, 175, 326, 442, 484, 838, 1000, 1060
BtsIMutI CAGTG 4 cut(s) 188, 214, 651, 712
Cac8I GCNNGC 3 cut(s) 626, 1172, 1176
CciI TCATGA 1 cut(s) 549
Cfr10I RCCGGY 2 cut(s) 624, 1013
Cfr13I GGNCC 3 cut(s) 940, 1016, 1154
Csp6I GTAC 1 cut(s) 717
CspAI ACCGGT 1 cut(s) 1013
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 4 cut(s) 317, 550, 726, 1077
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 3 cut(s) 217, 498, 1061
DpnI GATC 2 cut(s) 8, 405
DpnII GATC 2 cut(s) 6, 403
EaeI YGGCCR 1 cut(s) 336
EciI GGCGGA 1 cut(s) 845
Eco130I CCWWGG 3 cut(s) 578, 1115, 1165
Eco47I GGWCC 3 cut(s) 940, 1016, 1154
Eco57I CTGAAG 1 cut(s) 831
EcoO109I RGGNCCY 1 cut(s) 940
EcoRI GAATTC 1 cut(s) 1193
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 3 cut(s) 578, 1115, 1165
ErhI CCWWGG 3 cut(s) 578, 1115, 1165
FaeI CATG 4 cut(s) 320, 553, 729, 1080
FaqI GGGAC 1 cut(s) 953
FatI CATG 4 cut(s) 316, 549, 725, 1076
FauNDI CATATG 1 cut(s) 955
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 537, 1124
FokI GGATG 8 cut(s) 127, 182, 333, 449, 491, 845, 1007, 1067
Fsp4HI GCNGC 2 cut(s) 537, 1124
FspBI CTAG 3 cut(s) 300, 473, 930
GluI GCNGC 2 cut(s) 537, 1124
GsuI CTGGAG 1 cut(s) 1046
HaeIII GGCC 3 cut(s) 338, 604, 1170
HapII CCGG 4 cut(s) 58, 625, 754, 1014
Hin1II CATG 4 cut(s) 320, 553, 729, 1080
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 6 cut(s) 77, 235, 281, 296, 757, 947
HpaII CCGG 4 cut(s) 58, 625, 754, 1014
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 3 cut(s) 420, 487, 1154
Hpy188I TCNGA 8 cut(s) 68, 76, 253, 501, 600, 658, 780, 1211
Hpy188III TCNNGA 7 cut(s) 278, 473, 550, 907, 992, 1004, 1025
Hpy8I GTNNAC 3 cut(s) 420, 487, 1154
HpyAV CCTTC 3 cut(s) 763, 929, 1001
HpyCH4III ACNGT 5 cut(s) 183, 289, 390, 716, 915
HpyCH4V TGCA 6 cut(s) 28, 354, 571, 707, 953, 1123
HpyF3I CTNAG 3 cut(s) 217, 498, 1061
Hsp92II CATG 4 cut(s) 320, 553, 729, 1080
KroI GCCGGC 1 cut(s) 624
KroNI GCCGGC 1 cut(s) 626
Kzo9I GATC 2 cut(s) 6, 403
LmnI GCTCC 2 cut(s) 520, 687
Lsp1109I GCAGC 2 cut(s) 548, 1135
LweI GCATC 1 cut(s) 823
MaeI CTAG 3 cut(s) 300, 473, 930
MaeIII GTNAC 4 cut(s) 127, 232, 245, 289
MalI GATC 2 cut(s) 8, 405
MboI GATC 2 cut(s) 6, 403
MboII GAAGA 4 cut(s) 16, 398, 837, 1194
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 122, 1145
MlsI TGGCCA 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 2 cut(s) 229, 941
MmeI TCCRAC 1 cut(s) 897
Mox20I TGGCCA 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 987
MscI TGGCCA 1 cut(s) 338
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 319
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 4 cut(s) 58, 625, 754, 1014
MspR9I CCNGG 2 cut(s) 754, 789
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 2 cut(s) 523, 571
MvaI CCWGG 1 cut(s) 789
NaeI GCCGGC 1 cut(s) 626
NciI CCSGG 1 cut(s) 754
NdeI CATATG 1 cut(s) 955
NdeII GATC 2 cut(s) 6, 403
NgoMIV GCCGGC 1 cut(s) 624
NlaIII CATG 4 cut(s) 320, 553, 729, 1080
NlaIV GGNNCC 3 cut(s) 689, 941, 1012
NmuCI GTSAC 2 cut(s) 232, 289
PagI TCATGA 1 cut(s) 549
PctI GAATGC 2 cut(s) 523, 571
PdiI GCCGGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 4 cut(s) 77, 281, 296, 757
PflMI CCANNNNNTGG 1 cut(s) 370
PinAI ACCGGT 1 cut(s) 1013
PkrI GCNGC 2 cut(s) 538, 1125
PleI GAGTC 2 cut(s) 229, 941
PpsI GAGTC 2 cut(s) 229, 941
PpuMI RGGWCCY 1 cut(s) 940
Psp5II RGGWCCY 1 cut(s) 940
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 3 cut(s) 689, 941, 1012
PspPI GGNCC 3 cut(s) 940, 1016, 1154
PspPPI RGGWCCY 1 cut(s) 940
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 1 cut(s) 319
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 2 cut(s) 537, 1124
Sau3AI GATC 2 cut(s) 6, 403
Sau96I GGNCC 3 cut(s) 940, 1016, 1154
SchI GAGTC 2 cut(s) 229, 941
ScrFI CCNGG 2 cut(s) 754, 789
SduI GDGCHC 2 cut(s) 122, 1145
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 3 cut(s) 410, 609, 705
SinI GGWCC 3 cut(s) 940, 1016, 1154
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 1138
SmoI CTYRAG 1 cut(s) 1138
SsiI CCGC 2 cut(s) 34, 830
SspMI CTAG 3 cut(s) 300, 473, 930
StyD4I CCNGG 2 cut(s) 752, 787
StyI CCWWGG 3 cut(s) 578, 1115, 1165
TaaI ACNGT 5 cut(s) 183, 289, 390, 716, 915
TaqI TCGA 1 cut(s) 945
TaqII GACCGA 1 cut(s) 504
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 4 cut(s) 77, 281, 296, 757
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 4 cut(s) 188, 214, 651, 719
TseFI GTSAC 2 cut(s) 232, 289
TseI GCWGC 2 cut(s) 536, 1123
Tsp45I GTSAC 2 cut(s) 232, 289
TspDTI ATGAA 7 cut(s) 17, 168, 186, 357, 566, 996, 1065
TspRI CASTG 4 cut(s) 188, 214, 651, 719
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 3 cut(s) 940, 1016, 1154
XapI RAATTY 6 cut(s) 61, 69, 529, 565, 783, 1193
XbaI TCTAGA 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 3 cut(s) 300, 473, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.