Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029481

Physical Location & Seq

Genomic Coordinates Forward (+)

26863995 .. 26864902

Gene Structure 908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCCGGTATTCGAAACAGATACCAACTTATAAAAGTAAATGCTAAGGGGATGAATGAAGGGGGCAAGTGGGTGGAAATGTTTGAAGATGTATGCGTGGTAGTGTTTTGCGTCGCGCTTAGTGATTATAACCAGATGTGGGTTTCCCCAGACAATAGCAGCAATGAAGCGTCACTTCAAAATAAGATGATACAAAGTAATGAGCTCTTTGAGAATATGGTCAGGCACCCTTGCTTTAAGGATACCCCTTTCATATTAATACTAAACAATTGTTGCGAATGGTTCAATGATTTTAGTCCGGTGAAACCCCACAACAATAATCAGTCACTAGACCGTCAAGCTTACTTCTATGTTGCAATGAAGTTCAAAGATCTTTATGCTTCCATCACAGGCCGAAAGCTTTTTGTGTGGCAAGCTCGGGGAAGGGACGGAGTGACTGTTGATGAAGCATTCAAGTACATAAAGGAGGTTCTGAAGTGGGATGACGAGAAGGAGGAGACCAGAGGATTCATTTTACAATACAGACATGAGCTCCTCACCTTATGCCAAGTAGGGGTGATGTTTAATATCTTTATATTTGCGTTTGCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009898 GO:0009987 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

198

Amino Acids

23.11

Weight (kDa)

5.95

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029481)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g25110
rosa_multiflora	Rmu_co8292795.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	32, 129
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	139, 553
AgsI	TTSAA	5 cut(s)	86, 179, 286, 367, 454
AluBI	AGCT	5 cut(s)	205, 341, 400, 416, 532
AluI	AGCT	5 cut(s)	205, 341, 400, 416, 532
Alw21I	GWGCWC	2 cut(s)	207, 534
Alw26I	GTCTC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	159
AseI	ATTAAT	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	313, 529, 568
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	2 cut(s)	207, 534
Bbv12I	GWGCWC	2 cut(s)	207, 534
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	4 cut(s)	423, 453, 516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 553
Bse3DI	GCAATG	2 cut(s)	169, 363
BseGI	GGATG	2 cut(s)	57, 487
BseLI	CCNNNNNNNGG	2 cut(s)	139, 553
BseMI	GCAATG	2 cut(s)	169, 363
BseRI	GAGGAG	2 cut(s)	509, 524
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	2 cut(s)	207, 534
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	6, 299
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	139, 553
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	207, 534
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	169, 363
BssMI	GATC	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	335, 439
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	45, 119
BstF5I	GGATG	2 cut(s)	57, 487
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	57, 487
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	1 cut(s)	118
CseI	GACGC	2 cut(s)	100, 159
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	527
CviJI	RGCY	6 cut(s)	205, 341, 393, 400, 416, 532
CviKI_1	RGCY	6 cut(s)	205, 341, 393, 400, 416, 532
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	45, 119
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Ecl136II	GAGCTC	2 cut(s)	205, 532
Eco24I	GRGCYC	2 cut(s)	207, 534
Eco31I	GGTCTC	1 cut(s)	491
Eco53kI	GAGCTC	2 cut(s)	205, 532
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	417
EcoICRI	GAGCTC	2 cut(s)	205, 532
EcoT38I	GRGCYC	2 cut(s)	207, 534
FaeI	CATG	1 cut(s)	530
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	64, 494
FriOI	GRGCYC	2 cut(s)	207, 534
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	6, 299
HgaI	GACGC	2 cut(s)	100, 159
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	2 cut(s)	339, 398
HinfI	GANTC	1 cut(s)	507
HpaII	CCGG	2 cut(s)	6, 299
HphI	GGTGA	3 cut(s)	313, 529, 568
Hpy188I	TCNGA	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	53, 417, 484
HpyCH4III	ACNGT	2 cut(s)	335, 439
HpyCH4V	TGCA	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	45, 119
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	537
LpnPI	CCDG	7 cut(s)	19, 146, 162, 208, 312, 375, 514
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	171, 324, 433
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	207, 534
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	4 cut(s)	460, 487, 497, 545
MseI	TTAA	3 cut(s)	237, 257, 564
MspI	CCGG	2 cut(s)	6, 299
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	449
MvnI	CGCG	1 cut(s)	116
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	3 cut(s)	171, 324, 433
NspV	TTCGAA	1 cut(s)	13
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	257
PsiI	TTATAA	2 cut(s)	32, 129
Psp124BI	GAGCTC	2 cut(s)	207, 534
PspN4I	GGNNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	2 cut(s)	207, 534
SaqAI	TTAA	3 cut(s)	237, 257, 564
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	207, 534
SetI	ASST	7 cut(s)	207, 343, 402, 418, 471, 534, 542
SfuI	TTCGAA	1 cut(s)	13
Sse9I	AATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	2 cut(s)	207, 534
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	335, 439
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	3 cut(s)	237, 257, 564
Tru9I	TTAA	3 cut(s)	237, 257, 564
TseFI	GTSAC	3 cut(s)	171, 324, 433
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	3 cut(s)	171, 324, 433
TspDTI	ATGAA	7 cut(s)	68, 72, 180, 241, 374, 459, 499
TspGWI	ACGGA	1 cut(s)	444
VspI	ATTAAT	1 cut(s)	257
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.