Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292795.1

Orthogroup ID

OG0029481

Physical Location & Seq

Genomic Coordinates Forward (+)

178 .. 714

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtttgaagacgtgcgtgtggtggtgttttgcgtcgctcttagtgattatgatcagatatgggtttccccagacagtagtgggagcggatcattgcttcaaaataagataatacaaagcagggagctatttgagactatggtcagacacccttgctttaaagatactccttttgttttggtactaaacaagtatgatctctttgaggacaaggttaatcaggtgcctttaagtacttgtgaatggttctatgattttagtccagtgaagcctcaccacagtaaccagtcactggcccatcaagcttacttctatgttgcaatgaagttcaaagacctttatacttctatcacggatcgaaagcttttcgtgtggcaagctcgggcaagggaccgtgttacagttgatgagggcttcaagtacataagagaggttctcaagtgggatgaggagaaggaggcgaactactacggcggaccggaggattcattttacagtacagatatgagctcctcgccttatgtcaggcaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009898 GO:0009987 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

178

Amino Acids

21.0

Weight (kDa)

5.13

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029481)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g25110
rosa_multiflora	Rmu_co8292795.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	2 cut(s)	87, 474
AclWI	GGATC	2 cut(s)	97, 363
AfaI	GTAC	4 cut(s)	183, 235, 422, 499
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	8, 101, 331, 418
AjiI	CACGTC	1 cut(s)	13
AluBI	AGCT	5 cut(s)	127, 305, 364, 380, 510
AluI	AGCT	5 cut(s)	127, 305, 364, 380, 510
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	97, 363
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	295, 391, 476
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	391, 476
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	512
BccI	CCATC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	128
BmcAI	AGTACT	1 cut(s)	235
Bme18I	GGWCC	2 cut(s)	391, 476
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	295, 391, 476
BmiI	GGNNCC	2 cut(s)	225, 392
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	3 cut(s)	263, 286, 297
Bse3DI	GCAATG	2 cut(s)	92, 327
Bse8I	GATNNNNATC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	92, 327
BseNI	ACTGG	3 cut(s)	263, 286, 297
BseRI	GAGGAG	2 cut(s)	464, 502
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	52, 89, 196, 355
BspACI	CCGC	2 cut(s)	87, 474
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	225, 392
BspPI	GGATC	2 cut(s)	97, 363
BspT107I	GGYRCC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	92, 327
BsrI	ACTGG	3 cut(s)	263, 286, 297
BssMI	GATC	4 cut(s)	52, 89, 196, 355
Bst4CI	ACNGT	5 cut(s)	77, 281, 395, 403, 497
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	55, 92, 199, 358
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	52, 89, 196, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	270, 290
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	295, 391, 476
CpoI	CGGWCCG	1 cut(s)	476
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	182, 234, 421, 498
CspI	CGGWCCG	1 cut(s)	476
CviJI	RGCY	8 cut(s)	127, 271, 296, 305, 364, 380, 414, 510
CviKI_1	RGCY	8 cut(s)	127, 271, 296, 305, 364, 380, 414, 510
CviQI	GTAC	4 cut(s)	182, 234, 421, 498
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	54, 91, 198, 357
DpnII	GATC	4 cut(s)	52, 89, 196, 355
DraI	TTTAAA	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	391, 476
Eco53kI	GAGCTC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	512
FaqI	GGGAC	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	52
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	1 cut(s)	22
HindIII	AAGCTT	2 cut(s)	303, 362
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	57, 146
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	5 cut(s)	77, 281, 395, 403, 497
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 89, 196, 355
LmnI	GCTCC	3 cut(s)	84, 124, 515
LpnPI	CCDG	9 cut(s)	84, 106, 206, 276, 278, 299, 492, 511, 515
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	281, 288, 397
MalI	GATC	4 cut(s)	54, 91, 198, 357
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	4 cut(s)	52, 89, 196, 355
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	512
MnlI	CCTC	8 cut(s)	199, 282, 403, 424, 442, 451, 475, 523
MseI	TTAA	3 cut(s)	159, 216, 230
MspI	CCGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	4 cut(s)	52, 89, 196, 355
NlaIV	GGNNCC	2 cut(s)	225, 392
NmuCI	GTSAC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	292
PshAI	GACNNNNGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	225, 392
PspPI	GGNCC	3 cut(s)	295, 391, 476
PstNI	CAGNNNCTG	1 cut(s)	292
RsaI	GTAC	4 cut(s)	183, 235, 422, 499
RsaNI	GTAC	4 cut(s)	182, 234, 421, 498
Rsr2I	CGGWCCG	1 cut(s)	476
RsrII	CGGWCCG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	159, 216, 230
Sau3AI	GATC	4 cut(s)	52, 89, 196, 355
Sau96I	GGNCC	3 cut(s)	295, 391, 476
ScaI	AGTACT	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	512
SinI	GGWCC	2 cut(s)	391, 476
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SsiI	CCGC	2 cut(s)	87, 474
SstI	GAGCTC	1 cut(s)	512
TaaI	ACNGT	5 cut(s)	77, 281, 395, 403, 497
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	358
TatI	WGTACW	3 cut(s)	233, 420, 497
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	3 cut(s)	159, 216, 230
Tru9I	TTAA	3 cut(s)	159, 216, 230
TscAI	CASTG	2 cut(s)	270, 297
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	338, 477
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	270, 297
Van91I	CCANNNNNTGG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	391, 476
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.