Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024436

Physical Location & Seq

Genomic Coordinates Reverse (-)

58392 .. 59529

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAATCCAGCAGAGGAGGTGCGATCGTAGAAATCAAAGTGGTGTCGTGCAAAGATCTGAAAGCCTTCAATTTCTTCCAGAAGCTGTCAGTTTACGCGCTTGTCTCGGTGCAGAAGGATGACAATAAGCAGCAGGTGGTGGTGGATCAACAAAAACAAATGATGAATAGAACACCAACAGATAAGGAAGGAGATGGGAATCCAGAATGGAATCACGAGATGTGCTTTGAGTTTGATCAGTTTGATGACGATGATGATCTCTTCATTCACTTCGATCTGCGACACGAGGGTATGGGCCTGTTGGGAATTGGAGACAGGAGTATAGGAGAGGTTCGTGTGCCCTTGAAGGATCTCATACGCCTACAACAGCAGCACGATGCATTGGCAAGGTATGTAAATTATCAGGTGACGACTAGCGATAAAAAACCCAATGGGATACTGAACTTCTCCTACAAACTACTGAATTCGAAGCTACCTTACAAATTTGAGGTACATATACAAGACACCCATATGAACCATGGTAGTGCTGGAAGGCATGATGTTCACGATCATCAGCCGCTGCGTATCCAATATCCCACAATTACATTTGAAGACGATGACGATGATATATGTATTAGCAATAGCAATATTAGCAGCGCCGGCTACCACAACAAGCTCAACAGCAGTAACCAAGTCTGCCATCCGGCCAGCTCGCTAATGGAATTACATCAAACTCTTACTAGTAGTGCCCATTACAATTATAATCCTCCTCGGCCACCACCGGTGCTACCCCCAGCAGATGATCATGTTCATGCCTATTATCCACCTCCGCCACCGCCACCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCGCCACCGCCCATGGCAGAATATAATTATCTTCTACCTTCTCATCCAACTCGCCCATTCCATCATCCTTACCATGAATACGGTCCTTGGAGCCCAGAGATTGGACCACCGCAGCCACATGGACATGGACATGGACATGGATGGACATCAGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

337

Amino Acids

37.98

Weight (kDa)

5.83

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	10 - 122	1.1e-08	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024436)

Species	Orthologous Gene IDs
malus_domestica	MD17G1004000.v1.1
prunus_persica	Prupe.3G315200_v2.0.a1
pyrus_communis	pycom17g00070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AarI	CACCTGC	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccII	CGCG	1 cut(s)	98
AciI	CCGC	6 cut(s)	557, 809, 815, 854, 860, 962
AclWI	GGATC	2 cut(s)	153, 357
AcoI	YGGCCR	2 cut(s)	684, 752
AcsI	RAATTY	2 cut(s)	463, 482
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	953
AgeI	ACCGGT	1 cut(s)	760
AgsI	TTSAA	3 cut(s)	70, 346, 590
AhlI	ACTAGT	1 cut(s)	719
AluBI	AGCT	4 cut(s)	85, 472, 655, 690
AluI	AGCT	4 cut(s)	85, 472, 655, 690
Alw26I	GTCTC	2 cut(s)	109, 306
AlwI	GGATC	2 cut(s)	153, 357
AlwNI	CAGNNNCTG	2 cut(s)	85, 559
AoxI	GGCC	3 cut(s)	295, 684, 752
ApeKI	GCWGC	5 cut(s)	130, 370, 559, 633, 964
ApoI	RAATTY	2 cut(s)	463, 482
AsiGI	ACCGGT	1 cut(s)	760
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	100, 638
AspS9I	GGNCC	3 cut(s)	295, 935, 956
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	935, 956
BaeGI	GKGCMC	2 cut(s)	342, 730
BanII	GRGCYC	1 cut(s)	947
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BauI	CACGAG	2 cut(s)	215, 284
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	5 cut(s)	142, 382, 546, 645, 976
BccI	CCATC	4 cut(s)	188, 687, 921, 987
BciVI	GTATCC	2 cut(s)	429, 575
BclI	TGATCA	2 cut(s)	235, 781
BcoDI	GTCTC	2 cut(s)	109, 306
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	2 cut(s)	414, 720
BfoI	RGCGCY	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	2 cut(s)	429, 575
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	6 cut(s)	131, 371, 557, 560, 634, 965
BlsI	GCNGC	6 cut(s)	132, 372, 558, 561, 635, 966
Bme18I	GGWCC	2 cut(s)	935, 956
BmgT120I	GGNCC	3 cut(s)	295, 935, 956
BmiI	GGNNCC	1 cut(s)	944
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	467
BsaBI	GATNNNNATC	3 cut(s)	198, 255, 997
BsaJI	CCNNGG	4 cut(s)	517, 749, 864, 938
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	1 cut(s)	953
Bse118I	RCCGGY	2 cut(s)	638, 760
Bse8I	GATNNNNATC	3 cut(s)	198, 255, 997
BseDI	CCNNGG	4 cut(s)	517, 749, 864, 938
BseGI	GGATG	5 cut(s)	124, 679, 895, 916, 998
BseJI	GATNNNNATC	3 cut(s)	198, 255, 997
BseLI	CCNNNNNNNGG	1 cut(s)	953
BseSI	GKGCMC	2 cut(s)	342, 730
BseXI	GCAGC	5 cut(s)	142, 382, 546, 645, 976
BseYI	CCCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	297, 686, 754
BshTI	ACCGGT	1 cut(s)	760
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	639, 683, 761
BslI	CCNNNNNNNGG	1 cut(s)	953
BsmAI	GTCTC	2 cut(s)	109, 306
BsnI	GGCC	3 cut(s)	297, 686, 754
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	342, 730, 947
Bsp143I	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
Bsp19I	CCATGG	2 cut(s)	517, 864
BspACI	CCGC	6 cut(s)	557, 809, 815, 854, 860, 962
BspANI	GGCC	3 cut(s)	297, 686, 754
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	944
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	153, 357
BspT104I	TTCGAA	1 cut(s)	467
BsrFI	RCCGGY	2 cut(s)	638, 760
BssAI	RCCGGY	2 cut(s)	638, 760
BssECI	CCNNGG	4 cut(s)	517, 749, 864, 938
BssMI	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
BssSI	CACGAG	2 cut(s)	215, 284
BssT1I	CCWWGG	3 cut(s)	517, 864, 938
Bst2BI	CACGAG	2 cut(s)	215, 284
Bst4CI	ACNGT	1 cut(s)	935
Bst6I	CTCTTC	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	640, 688, 692
BstDSI	CCRYGG	2 cut(s)	517, 864
BstF5I	GGATG	5 cut(s)	124, 679, 895, 916, 998
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	100, 638
BstKTI	GATC	9 cut(s)	27, 58, 148, 238, 259, 277, 352, 550, 784
BstMAI	GTCTC	2 cut(s)	109, 306
BstMBI	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	630, 639
BstSLI	GKGCMC	2 cut(s)	342, 730
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	5 cut(s)	142, 382, 546, 645, 976
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	55, 349
BstYI	RGATCY	2 cut(s)	55, 349
BsuI	GTATCC	2 cut(s)	429, 575
BsuRI	GGCC	3 cut(s)	297, 686, 754
BtgI	CCRYGG	2 cut(s)	517, 864
BtsCI	GGATG	5 cut(s)	124, 679, 895, 916, 998
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	640, 688, 692
CaiI	CAGNNNCTG	2 cut(s)	85, 559
CfoI	GCGC	2 cut(s)	100, 638
Cfr10I	RCCGGY	2 cut(s)	638, 760
Cfr13I	GGNCC	3 cut(s)	295, 935, 956
Csp6I	GTAC	1 cut(s)	491
CspAI	ACCGGT	1 cut(s)	760
CviQI	GTAC	1 cut(s)	491
DpnI	GATC	9 cut(s)	26, 57, 147, 237, 258, 276, 351, 549, 783
DpnII	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
EaeI	YGGCCR	2 cut(s)	684, 752
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	2 cut(s)	798, 843
Eco130I	CCWWGG	3 cut(s)	517, 864, 938
Eco24I	GRGCYC	1 cut(s)	947
Eco47I	GGWCC	2 cut(s)	935, 956
EcoRI	GAATTC	1 cut(s)	463
EcoT14I	CCWWGG	3 cut(s)	517, 864, 938
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	947
ErhI	CCWWGG	3 cut(s)	517, 864, 938
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	2 cut(s)	235, 781
Fnu4HI	GCNGC	6 cut(s)	131, 371, 557, 560, 634, 965
FokI	GGATG	5 cut(s)	131, 666, 882, 903, 1005
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	6 cut(s)	131, 371, 557, 560, 634, 965
FspBI	CTAG	2 cut(s)	414, 720
GlaI	GCGC	2 cut(s)	99, 637
GluI	GCNGC	6 cut(s)	131, 371, 557, 560, 634, 965
GsaI	CCCAGC	1 cut(s)	776
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	297, 686, 754
HapII	CCGG	3 cut(s)	639, 683, 761
HhaI	GCGC	2 cut(s)	100, 638
Hin6I	GCGC	2 cut(s)	98, 636
HinP1I	GCGC	2 cut(s)	98, 636
HinfI	GANTC	3 cut(s)	5, 199, 211
HpaII	CCGG	3 cut(s)	639, 683, 761
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	94, 544
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	79, 203, 215, 545
Hpy8I	GTNNAC	2 cut(s)	94, 544
HpyAV	CCTTC	6 cut(s)	76, 109, 182, 340, 525, 900
HpyCH4III	ACNGT	1 cut(s)	935
HpyCH4V	TGCA	3 cut(s)	51, 112, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	630, 639
HspAI	GCGC	2 cut(s)	98, 636
KroI	GCCGGC	1 cut(s)	638
KroNI	GCCGGC	1 cut(s)	640
Ksp22I	TGATCA	2 cut(s)	235, 781
Kzo9I	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	5 cut(s)	142, 382, 546, 645, 976
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	414, 720
MaeIII	GTNAC	2 cut(s)	406, 665
MalI	GATC	9 cut(s)	26, 57, 147, 237, 258, 276, 351, 549, 783
MboI	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
MboII	GAAGA	4 cut(s)	67, 253, 602, 875
MflI	RGATCY	2 cut(s)	55, 349
MhlI	GDGCHC	3 cut(s)	342, 730, 947
MluCI	AATT	9 cut(s)	70, 306, 397, 463, 482, 579, 701, 736, 877
MmeI	TCCRAC	1 cut(s)	923
Mph1103I	ATGCAT	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	65
MslI	CAYNNNNRTG	6 cut(s)	509, 522, 789, 975, 981, 987
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	3 cut(s)	639, 683, 761
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	630, 639
NaeI	GCCGGC	1 cut(s)	640
NcoI	CCATGG	2 cut(s)	517, 864
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
NgoMIV	GCCGGC	1 cut(s)	638
NlaIV	GGNNCC	1 cut(s)	944
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	5, 199, 211
PflMI	CCANNNNNTGG	1 cut(s)	953
PinAI	ACCGGT	1 cut(s)	760
PkrI	GCNGC	6 cut(s)	132, 372, 558, 561, 635, 966
Ple19I	CGATCG	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	944
PspPI	GGNCC	3 cut(s)	295, 935, 956
PsrI	GAACNNNNNNTAC	2 cut(s)	434, 466
PstNI	CAGNNNCTG	2 cut(s)	85, 559
PsuI	RGATCY	2 cut(s)	55, 349
PvuI	CGATCG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	6 cut(s)	509, 522, 789, 975, 981, 987
SatI	GCNGC	6 cut(s)	131, 371, 557, 560, 634, 965
Sau3AI	GATC	9 cut(s)	24, 55, 145, 235, 256, 274, 349, 547, 781
Sau96I	GGNCC	3 cut(s)	295, 935, 956
SduI	GDGCHC	3 cut(s)	342, 730, 947
SfaNI	GCATC	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	467
SgrAI	CRCCGGYG	1 cut(s)	760
SinI	GGWCC	2 cut(s)	935, 956
SmiMI	CAYNNNNRTG	6 cut(s)	509, 522, 789, 975, 981, 987
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	9 cut(s)	70, 306, 397, 463, 482, 579, 701, 736, 877
SsiI	CCGC	6 cut(s)	557, 809, 815, 854, 860, 962
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	414, 720
StyI	CCWWGG	3 cut(s)	517, 864, 938
TaaI	ACNGT	1 cut(s)	935
TaqI	TCGA	2 cut(s)	273, 467
TasI	AATT	9 cut(s)	70, 306, 397, 463, 482, 579, 701, 736, 877
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	3 cut(s)	5, 199, 211
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	130, 370, 559, 633, 964
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	179, 253, 527, 779, 942
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	2 cut(s)	935, 956
XapI	RAATTY	2 cut(s)	463, 482
XcmI	CCANNNNNNNNNTGG	3 cut(s)	515, 524, 694
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	414, 720
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.