Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0022130

Physical Location & Seq

Genomic Coordinates Forward (+)

2581149 .. 2581667

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCTGCCCAGAAGATCGAAACGGGTCACCAGGACACTGTCCACGATGTAGCCATGGATTACTATGGAAAGCGTCTAGCAACAGCTTCGTCTGATGCCACCATTAAGATAATTGGTGTCGGAAACGCTTCACAGCACCTTGCTACATTGTCAGCTCATAGAGGCCCTGTTTGGGAGGTAGCTTGGGCGCATCCCAAGTTCGGGTCGATTCTTGCTTCTTGTTCATATGATGGACAGGTGATCATTTGGAAGGAGGGTAATCCCAATGAGTGGCAACAGGCTCATGTTTTTACCGACCACAAGTCATCGGTAAATTCCATTGCTTGGGCACCACATGAACTTGGTCTGAGCTTAGCCTGCGGTTCTTCTGATGGGAATATATCGGTTTTCACTGCCAGGGCCGATGGTGGTTGGGACACCACTAAGATAGATCGATCAAGCCCACCCTGTTGGAGTAACCTCAGTTTCATGGGCACCATCGATGGCTCCTGGTGCTCTAGTTGGATCTGGTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031080 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0098588 GO:0098805 GO:0098852

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

18.65

Weight (kDa)

5.83

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	4 - 111	1.8e-08	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	5 - 111	5.1e-12	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	8 - 134	1.9e-16	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	8 - 84	1.3e-10	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	8 - 86	6.8e-06	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	9 - 133	6.3e-14	CDC20/Fizzy WD40 domain
WDR55	PF24796	9 - 134	1e-06	WDR55
WD40_MABP1-WDR62_2nd	PF24782	9 - 133	1.9e-06	MABP1/WDR62 second WD40 domain
Beta-prop_THOC3	PF25174	10 - 83	6.5e-12	THOC3 beta-propeller domain
WD40_Prp19	PF24814	43 - 130	1.5e-08	Prp19 WD40 domain
WD40	PF00400	45 - 83	1.4e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	48 - 133	2e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	53 - 139	6.8e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02380 FvH4_1g02380
pyrus_communis	pycom17g03780
rosa_samantha	Rh4BG007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	328, 473
AccB7I	CCANNNNNTGG	2 cut(s)	270, 324
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	313
AfiI	CCNNNNNNNGG	5 cut(s)	172, 200, 201, 270, 324
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	3 cut(s)	30, 395, 488
AluBI	AGCT	4 cut(s)	86, 155, 182, 351
AluI	AGCT	4 cut(s)	86, 155, 182, 351
Alw21I	GWGCWC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	2 cut(s)	163, 399
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	164, 399
AsuHPI	GGTGA	2 cut(s)	20, 250
BaeGI	GKGCMC	2 cut(s)	331, 476
BanI	GGYRCC	2 cut(s)	328, 473
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	5 cut(s)	224, 365, 398, 476, 485
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	3 cut(s)	32, 397, 490
BclI	TGATCA	1 cut(s)	240
BfaI	CTAG	2 cut(s)	77, 498
BlpI	GCTNAGC	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	32, 397, 490
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	164, 399
BmiI	GGNNCC	3 cut(s)	330, 475, 487
BmrFI	CCNGG	3 cut(s)	32, 397, 490
BmsI	GCATC	2 cut(s)	85, 199
Bpu1102I	GCTNAGC	1 cut(s)	352
Bsa29I	ATCGAT	2 cut(s)	433, 480
BsaJI	CCNNGG	2 cut(s)	54, 396
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 200, 201, 270, 324
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	32, 397, 490
BseCI	ATCGAT	2 cut(s)	433, 480
BseDI	CCNNGG	2 cut(s)	54, 396
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	5 cut(s)	172, 200, 201, 270, 324
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	338, 475
BseSI	GKGCMC	2 cut(s)	331, 476
BshFI	GGCC	2 cut(s)	165, 401
BshNI	GGYRCC	2 cut(s)	328, 473
BshVI	ATCGAT	2 cut(s)	433, 480
BsiHKAI	GWGCWC	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	5 cut(s)	172, 200, 201, 270, 324
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	165, 401
Bsp1286I	GDGCHC	3 cut(s)	331, 476, 497
Bsp143I	GATC	5 cut(s)	15, 240, 430, 434, 504
Bsp1720I	GCTNAGC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	165, 401
BspCNI	CTCAG	2 cut(s)	339, 474
BspDI	ATCGAT	2 cut(s)	433, 480
BspLI	GGNNCC	3 cut(s)	330, 475, 487
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	2 cut(s)	328, 473
BsrDI	GCAATG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	54, 396
BssMI	GATC	5 cut(s)	15, 240, 430, 434, 504
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	3 cut(s)	32, 397, 490
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	6, 358
BstDEI	CTNAG	4 cut(s)	347, 352, 423, 461
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	5 cut(s)	18, 243, 433, 437, 507
BstMBI	GATC	5 cut(s)	15, 240, 430, 434, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 492
BstNI	CCWGG	3 cut(s)	32, 397, 490
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	30, 395, 488
BstSLI	GKGCMC	2 cut(s)	331, 476
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	504
Bsu15I	ATCGAT	2 cut(s)	433, 480
BsuRI	GGCC	2 cut(s)	165, 401
BsuTUI	ATCGAT	2 cut(s)	433, 480
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	36, 390
Cac8I	GCNNGC	2 cut(s)	6, 358
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	164, 399
ClaI	ATCGAT	2 cut(s)	433, 480
CseI	GACGC	1 cut(s)	62
CviAII	CATG	4 cut(s)	55, 284, 335, 469
DdeI	CTNAG	4 cut(s)	347, 352, 423, 461
DpnI	GATC	5 cut(s)	17, 242, 432, 436, 506
DpnII	GATC	5 cut(s)	15, 240, 430, 434, 504
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	164
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	30, 395, 488
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	4 cut(s)	58, 287, 338, 472
FaiI	YATR	9 cut(s)	56, 66, 159, 226, 228, 285, 336, 380, 470
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	4 cut(s)	54, 283, 334, 468
FauNDI	CATATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	1 cut(s)	177
FspBI	CTAG	2 cut(s)	77, 498
GlaI	GCGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	165, 401
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	58, 287, 338, 472
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	2 cut(s)	20, 250
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	94, 122, 348, 370
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 492
HpyF3I	CTNAG	4 cut(s)	347, 352, 423, 461
Hsp92II	CATG	4 cut(s)	58, 287, 338, 472
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	15, 240, 430, 434, 504
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	2 cut(s)	85, 199
MaeI	CTAG	2 cut(s)	77, 498
MaeIII	GTNAC	2 cut(s)	26, 455
MalI	GATC	5 cut(s)	17, 242, 432, 436, 506
MboI	GATC	5 cut(s)	15, 240, 430, 434, 504
MboII	GAAGA	2 cut(s)	25, 357
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	3 cut(s)	331, 476, 497
MluCI	AATT	2 cut(s)	111, 313
MmeI	TCCRAC	3 cut(s)	100, 431, 482
MnlI	CCTC	4 cut(s)	155, 169, 247, 470
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	32, 397, 490
MvaI	CCWGG	3 cut(s)	32, 397, 490
MwoI	GCNNNNNNNGC	2 cut(s)	357, 492
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	5 cut(s)	15, 240, 430, 434, 504
NlaIII	CATG	4 cut(s)	58, 287, 338, 472
NlaIV	GGNNCC	3 cut(s)	330, 475, 487
NmuCI	GTSAC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	2 cut(s)	270, 324
Psp6I	CCWGG	3 cut(s)	30, 395, 488
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	30, 395, 488
PspN4I	GGNNCC	3 cut(s)	330, 475, 487
PspPI	GGNCC	2 cut(s)	164, 399
PsuI	RGATCY	1 cut(s)	504
PsyI	GACNNNGTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	5 cut(s)	15, 240, 430, 434, 504
Sau96I	GGNCC	2 cut(s)	164, 399
ScrFI	CCNGG	3 cut(s)	32, 397, 490
SduI	GDGCHC	3 cut(s)	331, 476, 497
SetI	ASST	8 cut(s)	88, 141, 157, 180, 184, 240, 353, 462
SfaNI	GCATC	2 cut(s)	85, 199
Sse9I	AATT	2 cut(s)	111, 313
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	77, 498
StyD4I	CCNGG	3 cut(s)	30, 395, 488
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	4 cut(s)	18, 206, 433, 480
TasI	AATT	2 cut(s)	111, 313
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	43, 397
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	213, 351, 457
TspRI	CASTG	2 cut(s)	43, 397
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	2 cut(s)	270, 324
XapI	RAATTY	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	2 cut(s)	77, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.