Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024637

Physical Location & Seq

Genomic Coordinates Forward (+)

5477136 .. 5477411

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACGTCATACGGGCCGGTCCATGCCTCTGTCGATTTTAGGCTGGCCTGGAGACCAGCTTGGGCTGGATGCCAGCCTATCTGCTGGGCTGGAGTGGAATGGCTAGATGCCGGGCCAATAATTTGGCTGGGTGCCGGCCTATTTGTTCTCCGGTGGAGGTGCTCTCAGAAAATTAAGGTTGAAGACAACCGTACATACATAGCATGTGTAATGATAATTATTTTGAAAATCTTCGAAATCCTTATTTATTTACTCAAATTCATTTCTAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

92

Amino Acids

10.44

Weight (kDa)

8.82

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024637)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g08440 pycom10g03960 pycom17g07510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	182, 226
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	4 cut(s)	14, 45, 113, 136
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	14, 19, 113
AsuC2I	CCSGG	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	49, 112
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	14, 19, 113
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	49, 112
BmsI	GCATC	2 cut(s)	59, 97
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	2 cut(s)	70, 111
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	2 cut(s)	16, 134
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	179
BseYI	CCCAGC	2 cut(s)	84, 127
BshFI	GGCC	4 cut(s)	16, 47, 115, 138
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	17, 111, 135, 151
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	16, 47, 115, 138
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	164
BspANI	GGCC	4 cut(s)	16, 47, 115, 138
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	16, 134
BssAI	RCCGGY	2 cut(s)	16, 134
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	45, 74, 136
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	47, 110
BstV2I	GAAGAC	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	16, 47, 115, 138
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	45, 74, 136
Cfr10I	RCCGGY	2 cut(s)	16, 134
Cfr13I	GGNCC	3 cut(s)	14, 19, 113
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	23, 204
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	26, 207
FaiI	YATR	5 cut(s)	10, 24, 196, 200, 205
FatI	CATG	2 cut(s)	22, 203
FokI	GGATG	1 cut(s)	81
FspBI	CTAG	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	88, 131
GsuI	CTGGAG	2 cut(s)	70, 111
HaeIII	GGCC	4 cut(s)	16, 47, 115, 138
HapII	CCGG	4 cut(s)	17, 111, 135, 151
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	26, 207
HpaII	CCGG	4 cut(s)	17, 111, 135, 151
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	5
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	26, 207
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	59, 97
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	5
MboII	GAAGA	2 cut(s)	194, 223
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	120, 171, 216, 257, 268
MnlI	CCTC	2 cut(s)	37, 150
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	174
MspI	CCGG	4 cut(s)	17, 111, 135, 151
MspR9I	CCNGG	2 cut(s)	49, 112
MvaI	CCWGG	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	26, 207
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	84, 127
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	14, 19, 113
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	14, 19, 113
ScrFI	CCNGG	2 cut(s)	49, 112
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	8, 61, 161, 180
SfaNI	GCATC	2 cut(s)	59, 97
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	5 cut(s)	120, 171, 216, 257, 268
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	47, 110
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	33, 234
TasI	AATT	5 cut(s)	120, 171, 216, 257, 268
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.